Detailed information NTG0487655

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: KEF49_RS12610
• Genome accession: NZ_CP073635
• Coordinates: 2503765..2506143 (-)
• Length: 792 a.a.
• NCBI ID: WP_115997690.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain Ba13
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2498765..2511143

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KEF49_RS12575 (KEF49_12575)	-	2499843..2500571 (+)	729	WP_115997689.1	amino acid ABC transporter ATP-binding protein	-
KEF49_RS12580 (KEF49_12580)	-	2500595..2501422 (+)	828	WP_013353014.1	transporter substrate-binding domain-containing protein	-
KEF49_RS12585 (KEF49_12585)	-	2501480..2502130 (+)	651	WP_065981957.1	amino acid ABC transporter permease	-
KEF49_RS12590 (KEF49_12590)	-	2502149..2502805 (+)	657	WP_065522692.1	amino acid ABC transporter permease	-
KEF49_RS12595 (KEF49_12595)	-	2502839..2502970 (-)	132	WP_003152741.1	YrzQ family protein	-
KEF49_RS12600 (KEF49_12600)	-	2502992..2503183 (-)	192	WP_003152738.1	hypothetical protein	-
KEF49_RS12605 (KEF49_12605)	-	2503196..2503654 (-)	459	WP_065981959.1	hypothetical protein	-
KEF49_RS12610 (KEF49_12610)	recD/recD2/recDB	2503765..2506143 (-)	2379	WP_115997690.1	ATP-dependent RecD-like DNA helicase	Machinery gene
KEF49_RS12615 (KEF49_12615)	-	2506162..2506812 (-)	651	WP_013353019.1	tetratricopeptide repeat protein	-
KEF49_RS12620 (KEF49_12620)	mnmA	2506870..2507985 (-)	1116	WP_065981961.1	tRNA 2-thiouridine(34) synthase MnmA	-
KEF49_RS12625 (KEF49_12625)	-	2508022..2509161 (-)	1140	WP_065981962.1	cysteine desulfurase family protein	-
KEF49_RS12630 (KEF49_12630)	cymR	2509180..2509596 (-)	417	WP_013353022.1	cysteine metabolism transcriptional regulator CymR	-
KEF49_RS12635 (KEF49_12635)	rarA	2509791..2511059 (+)	1269	WP_065981963.1	replication-associated recombination protein A	Machinery gene

Sequence

Protein

• Length: 792 a.a.
• Molecular weight: 88274.09 Da
• Isoelectric Point: 5.0709

>NTDB_id=487655 KEF49_RS12610 WP_115997690.1 2503765..2506143(-) (recD/recD2/recDB) [Bacillus amyloliquefaciens strain Ba13]
MDQLKIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDETYTFYGKTATHPKFGLQFQA
EHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGDGALNKILADASVLYDVPKMSKKKADKLAGELQRHQGLEQI
MISLNQYGFGPQLSMKIYQAYETETLEKIQENPYQLVKDVEGIGFVKADELGGKMGLSGNHPERIKAAILYTIESTCLSE
GHTYIDTKQLIINTQTLLNQSAGGGRVTEMDAAEGIIALGESKDIVIEGERCYFPSLFYAEQNVAKRVLDIAAQTEYADQ
FPESEFLLALGELEERMKVQYAPSQKDAIQKALSSPMLLLTGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDEAFPV
LLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTKDRSFIRCNSAQIKEVVDQVV
SNALKKGYTSRDIQVLAPMYRGKAGINELNMLLQDIMNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIV
SIFYAKENTEKEDMVVVSFDGNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIGMEGITPFDFMEEKA

Nucleotide

• Length: 2379 bp

>NTDB_id=487655 KEF49_RS12610 WP_115997690.1 2503765..2506143(-) (recD/recD2/recDB) [Bacillus amyloliquefaciens strain Ba13]
GTGGATCAGCTGAAAATCGAGGAACAACCGTATGTAAAAGGCGTCATTCATACGGTCATTTACCACAATGACACCAACCT
GTATACAGTGCTGAAAGTCAAGGTTGCAGAAACGTCTGAGGCGATCGAAGACAAGGTCGTATCCGTAACGGGCTACTTCC
CTCTGCTGCAAGAAGATGAGACTTACACATTTTACGGAAAAACCGCCACACATCCCAAGTTCGGCCTGCAATTCCAGGCT
GAACACTTTAAGAAAGAAATTCCGACCACAAAAGAAGGGATCATTCACTATTTATCAAGCGATCTGTTTGAAGGAATCGG
AAAAAAAACGGCGGAAGAAATCGTCAAAAAGCTCGGAGACGGCGCGCTGAATAAAATTCTGGCTGATGCGTCGGTGCTTT
ACGATGTGCCGAAAATGTCCAAAAAGAAAGCGGATAAGCTTGCCGGAGAGCTGCAGCGGCATCAGGGGCTGGAGCAGATT
ATGATTTCTCTTAACCAATACGGTTTCGGACCTCAGCTTTCCATGAAAATTTATCAGGCTTACGAAACGGAAACCCTTGA
GAAAATTCAGGAGAATCCTTATCAGCTTGTAAAGGACGTGGAAGGCATCGGCTTTGTAAAGGCCGACGAGCTGGGCGGAA
AAATGGGTCTGTCAGGAAACCATCCCGAGCGGATCAAAGCGGCTATCTTATATACGATTGAATCGACCTGCCTTTCAGAA
GGTCATACGTACATAGACACAAAGCAGCTGATTATCAATACGCAAACGCTTCTGAATCAGTCAGCTGGCGGAGGCCGCGT
CACGGAAATGGATGCGGCTGAAGGCATCATCGCCCTCGGAGAGAGTAAGGATATCGTCATAGAAGGAGAACGCTGCTATT
TTCCGTCTTTGTTTTACGCGGAACAAAATGTCGCAAAACGCGTGCTCGATATTGCGGCTCAGACGGAGTATGCCGATCAA
TTTCCTGAATCGGAATTTCTGCTTGCGCTCGGCGAACTGGAAGAACGGATGAAAGTTCAATACGCTCCGAGCCAAAAGGA
TGCTATTCAAAAAGCGCTGTCGTCGCCGATGCTTTTACTGACCGGGGGACCGGGTACGGGAAAAACGACCGTTATCAAAG
GAATCGTGGAATTATACAGTGAACTCCACGGCGTATCGCTTGATCCCGGTGATTATAAAAAAGACGAGGCGTTTCCGGTG
CTGCTTGCCGCGCCGACCGGAAGAGCCGCAAAACGGATGAGTGAATCTACGGGTCTGCCGGCTGTTACGATTCACAGGCT
GCTCGGCTGGAATGGCGCTGAAGGCTTTACCTATAATGAGGATCAGCCGATTGAAGGGAAACTGATCATTATAGACGAAG
CGAGTATGCTCGATATTTGGCTCGCCAGCCATTTGTTTAAGGCGCTCCCTAAGCACATTCAGCTCATCGTCGTCGGTGAT
GAAGACCAGCTTCCTTCCGTGGGGCCGGGGCAGGTGCTGAGAGACCTTTTGGCTTCTGAGGTGCTGCCGACCGTGCGCCT
GACAGATATTTACCGTCAGGCGGAAGGGTCATCCATCGTCGAACTTGCCCATGATATGAAAAAAGGACTGCTTCCAAAAG
GACTGACCGCGCCGACAAAGGACCGCTCGTTTATCCGCTGTAATTCTGCACAGATTAAAGAAGTCGTCGATCAAGTCGTT
TCAAACGCGTTAAAGAAGGGATATACCTCCAGAGATATTCAAGTGCTTGCGCCGATGTACAGGGGAAAAGCGGGAATTAA
CGAGCTGAATATGCTTCTTCAAGACATCATGAATCCGCCGAAAGAAAAAAGGCGGGAGCTGAAATTCGGAGATGTCGTCT
ACAGAACGGGCGATAAAATATTGCAGCTTGTCAACCAGCCGGAAAACAATGTGTTTAACGGTGATATCGGCGAAATCGTG
TCCATTTTTTATGCCAAAGAAAATACGGAAAAAGAAGACATGGTAGTCGTCTCGTTTGACGGCAATGAAATCACCTTTAC
GAAAAAGGATTTCAGCCAGTTTACCCATGCTTACTGCTGTTCCATCCATAAGTCTCAGGGAAGTGAATTTCCGATTGTCG
TCCTGCCTGTCGTCAAAGGCTACTATCGTATGCTTAGGAGAAATCTCCTTTATACCGCCATTACAAGGGCCAAGAAATTT
CTGATTCTTTGCGGAGAAGAAGAAGCGCTTGAATGGGGTGTCAAAAACAATGATGCCACCGTCAGACAGACGTCGCTTAA
AAACAGGCTCACAGAGCAGACTGAAGAGATGGATGCAGAACTGGCCGCTCTGCAAAAAGAACTGCCGTTCAGTGTATATG
ATGCGAACATCGGAATGGAAGGCATTACGCCGTTTGACTTTATGGAAGAAAAAGCGTAA

Domains

Predicted by InterProScan.

• AAA domain (AAA_30) (341-548)

• Helix-hairpin-helix containing domain (HHH_RecD2) (154-244)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-659)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (676-724)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	88.748	99.874	0.886