Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   KEF49_RS08635 Genome accession   NZ_CP073635
Coordinates   1778498..1779118 (-) Length   206 a.a.
NCBI ID   WP_007611720.1    Uniprot ID   A0AAI8HP04
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1773498..1784118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS08600 (KEF49_08600) - 1774037..1774276 (+) 240 WP_013352407.1 TM2 domain-containing protein -
  KEF49_RS08605 (KEF49_08605) - 1774448..1774882 (+) 435 WP_212101461.1 dUTP diphosphatase -
  KEF49_RS08610 (KEF49_08610) - 1775212..1776033 (+) 822 WP_193351835.1 poly-gamma-glutamate hydrolase family protein -
  KEF49_RS08615 (KEF49_08615) - 1776140..1776289 (+) 150 WP_013352411.1 hypothetical protein -
  KEF49_RS08620 (KEF49_08620) - 1776276..1777106 (+) 831 WP_045505921.1 prohibitin family protein -
  KEF49_RS08625 (KEF49_08625) - 1777134..1777583 (-) 450 WP_065981565.1 YndM family protein -
  KEF49_RS08630 (KEF49_08630) - 1777738..1778166 (+) 429 WP_065981566.1 hypothetical protein -
  KEF49_RS08635 (KEF49_08635) dinR/lexA 1778498..1779118 (-) 621 WP_007611720.1 transcriptional repressor LexA Regulator
  KEF49_RS08640 (KEF49_08640) yneA 1779274..1779585 (+) 312 WP_071346711.1 cell division suppressor protein YneA -
  KEF49_RS08645 (KEF49_08645) - 1779601..1780251 (+) 651 WP_065981568.1 recombinase family protein -
  KEF49_RS08650 (KEF49_08650) - 1780320..1780553 (+) 234 WP_003153997.1 DUF896 domain-containing protein -
  KEF49_RS08655 (KEF49_08655) recP/tkt 1780720..1782723 (+) 2004 WP_115997458.1 transketolase Machinery gene
  KEF49_RS08660 (KEF49_08660) sirA 1782874..1783320 (+) 447 WP_013352418.1 sporulation inhibitor of replication protein SirA -
  KEF49_RS08665 (KEF49_08665) - 1783406..1783624 (+) 219 WP_003153994.1 YneF family protein -
  KEF49_RS08670 (KEF49_08670) - 1783698..1783871 (-) 174 WP_088030684.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23046.64 Da        Isoelectric Point: 5.1645

>NTDB_id=487630 KEF49_RS08635 WP_007611720.1 1778498..1779118(-) (dinR/lexA) [Bacillus amyloliquefaciens strain Ba13]
MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEVLDEEEVQIPKSQ
VVNVPVIGKVTAGIPITAVENIDEYFPLPDRMVPPGEHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVAMTED
DEATVKRFYKEDNYVRLQPENPTMEPIILQNVSILGKVIGVFRAVH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=487630 KEF49_RS08635 WP_007611720.1 1778498..1779118(-) (dinR/lexA) [Bacillus amyloliquefaciens strain Ba13]
ATGACGAAGCTATCAAAAAGGCAGCTTGATATCCTGCGTTTTATTAAAGAAGAGGTAAAAACGAAAGGATATCCGCCTTC
TGTAAGAGAGATAGGAGAAGCAGTAGGACTGGCTTCCAGTTCAACCGTGCACGGACATTTGGCACGGCTGGAGACAAAAG
GCCTGATCAGACGGGACCCTACTAAACCGAGGGCCATTGAGGTATTGGATGAAGAAGAAGTTCAAATTCCGAAAAGCCAG
GTCGTAAATGTTCCGGTAATCGGGAAAGTGACGGCGGGTATTCCGATTACGGCTGTTGAAAATATCGATGAGTATTTTCC
GCTTCCTGACCGGATGGTTCCTCCGGGCGAACATGTATTTATGTTAGAAATCATGGGAGAAAGTATGATTGACGCCGGCA
TTTTTGACAAAGATTATGTCATTGTCAAACAGCAGAACACGGCTAATAACGGGGAAATCGTGGTGGCTATGACCGAAGAT
GATGAAGCGACGGTCAAGCGCTTCTATAAAGAGGACAATTATGTGCGGCTGCAGCCGGAAAATCCGACGATGGAACCGAT
TATCCTGCAAAACGTAAGCATTTTAGGGAAAGTCATCGGCGTATTCAGAGCCGTCCATTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-199)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAI8HP04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

92.718

100

0.927