Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KEF49_RS07725 Genome accession   NZ_CP073635
Coordinates   1537971..1538870 (+) Length   299 a.a.
NCBI ID   WP_115997236.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1532971..1543870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS07705 (KEF49_07705) - 1533660..1535363 (+) 1704 WP_212101348.1 glycosyl transferase -
  KEF49_RS07710 (KEF49_07710) - 1535360..1535641 (+) 282 WP_045506187.1 FlhB-like flagellar biosynthesis protein -
  KEF49_RS07715 (KEF49_07715) sucC 1535816..1536973 (+) 1158 WP_212101350.1 ADP-forming succinate--CoA ligase subunit beta -
  KEF49_RS07720 (KEF49_07720) sucD 1537002..1537904 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  KEF49_RS07725 (KEF49_07725) dprA 1537971..1538870 (+) 900 WP_115997236.1 DNA-processing protein DprA Machinery gene
  KEF49_RS07730 (KEF49_07730) topA 1539052..1541127 (+) 2076 WP_013352247.1 type I DNA topoisomerase -
  KEF49_RS07735 (KEF49_07735) trmFO 1541192..1542499 (+) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KEF49_RS07740 (KEF49_07740) xerC 1542569..1543486 (+) 918 WP_013352249.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32887.10 Da        Isoelectric Point: 9.4258

>NTDB_id=487620 KEF49_RS07725 WP_115997236.1 1537971..1538870(+) (dprA) [Bacillus amyloliquefaciens strain Ba13]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLRDPHPLTVLSEGKTAPKAIFREIERKEPELDKVLSDYRREGITVI
PISSSRYPSWLKTIYDPPAVLFAKGHTSLLEKGRKIGIVGTRKPTDDGIKAVGHLTAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARGVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=487620 KEF49_RS07725 WP_115997236.1 1537971..1538870(+) (dprA) [Bacillus amyloliquefaciens strain Ba13]
TTGGATCAAGCGTCGCGCTGTTTAATGGTCTGCAGTATCAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACGAGATCCGCATCCATTAACTGTTTTGTCAGAAGGGAAAACAGCTCCGAAAGCAA
TTTTTCGAGAAATAGAGCGCAAGGAACCGGAACTTGATAAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCTTCATGGCTTAAAACAATTTATGATCCGCCGGCTGTCTTGTTTGCAAAAGGGCACAC
GTCACTTCTTGAAAAAGGCAGAAAAATAGGGATTGTAGGAACGCGGAAACCGACGGATGACGGAATAAAAGCGGTTGGGC
ATCTTACCGCTGAACTCTCAAAAAAAGGCTGGGTCATAGTAAGCGGGCTGGCATCCGGCATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTAATAGCCGGCGGATTCCACCATATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACATCACCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAGTGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGATTAAGTGAAGGAATTGTAGTTGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACGGCTTATCAAGCCCTTGATCAAGGGAGAGAGGTATTTGCCGTTCCCGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCGGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGAGGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

71.572

100

0.716
  dprA Lactococcus lactis subsp. cremoris KW2

41.577

93.311

0.388