Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   KEF49_RS05175 Genome accession   NZ_CP073635
Coordinates   1054728..1058120 (+) Length   1130 a.a.
NCBI ID   WP_212100866.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1049728..1063120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS05165 (KEF49_05165) addA 1049788..1053492 (+) 3705 WP_212101650.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  KEF49_RS05170 (KEF49_05170) sbcD 1053559..1054731 (+) 1173 WP_065981123.1 exonuclease subunit SbcD -
  KEF49_RS05175 (KEF49_05175) sbcC 1054728..1058120 (+) 3393 WP_212100866.1 exonuclease subunit SbcC Machinery gene
  KEF49_RS05180 (KEF49_05180) - 1058136..1058435 (+) 300 WP_065981125.1 hypothetical protein -
  KEF49_RS05185 (KEF49_05185) - 1058475..1058693 (-) 219 WP_013351765.1 spore germination protein -
  KEF49_RS05190 (KEF49_05190) - 1058733..1059128 (-) 396 WP_212100869.1 spore germination protein GerPE -
  KEF49_RS05195 (KEF49_05195) - 1059128..1059304 (-) 177 WP_013351767.1 hypothetical protein -
  KEF49_RS05200 (KEF49_05200) - 1059301..1059918 (-) 618 WP_115997931.1 spore germination protein GerPC -
  KEF49_RS05205 (KEF49_05205) - 1059953..1060186 (-) 234 WP_115997932.1 spore germination protein GerPB -
  KEF49_RS05210 (KEF49_05210) - 1060199..1060420 (-) 222 WP_003155135.1 spore germination protein -
  KEF49_RS05215 (KEF49_05215) - 1060613..1060831 (-) 219 WP_212100872.1 aspartyl-phosphate phosphatase Spo0E family protein -
  KEF49_RS05220 (KEF49_05220) - 1061048..1061953 (+) 906 WP_212100873.1 fumarylacetoacetate hydrolase family protein -
  KEF49_RS05225 (KEF49_05225) - 1062047..1062403 (+) 357 WP_013351772.1 YisL family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128208.24 Da        Isoelectric Point: 5.5140

>NTDB_id=487595 KEF49_RS05175 WP_212100866.1 1054728..1058120(+) (sbcC) [Bacillus amyloliquefaciens strain Ba13]
MKPILLTIKGLHSFREEQTIDFDGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDQLAVSFTF
ALQSGHRVSYKVERVFKRTDETKVKTALCRLIEIKEEQTVLADKANEVNKKVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRRAQEAAAKKNEMLAEQSGLGDAGEDALKLAEQQFHEANERLEAAEKKRVQAR
ERFENHQEIWNLQTERNEYEARQEKLEEKRPYITGLTDRLKEAETALALEPYADRYTEAVRRKERAEQEHELAKRKLEAE
TASFTRQNEAYEAWRVHKAEQEPKLVKEEELYQRLSAIEQKLLEAKKEAEKTKAEHSKKEEEYEAASKQLTAVKDRLARG
KNRQNELKEELKAVQVTADERKKCQTAAQLAAGFQQTQEQITKERTNLTAQLKNMEKLNGESEALSAKAKSEEEDITRAY
QTLQTVYHMVCETERSLKAAAERADKMQADLRKRSEEARTAALTKELSEKLIEGKPCPVCGSTQHDRSRSAHETYSPDTA
VQERLQQVEALLSEAAALSQEVLTAKVALEEQSGRFTEECPFLQSARVPELEAASSISGRPLDEAFSAVRLEWKQMKQDM
LSVREKVTRLISTYQQTVKQAEQLAERIRYEEKEADRLRHSLEELESLSESRLNQYNEACGDIPLSRIDAWQASIDDKDR
QAEEFEKRIETSIAFLKEHEDEKERLQEKKHQLERERLELHYASERLQQVIDGYEQELGTAAEETSISAKLDAVRQELQL
LKSKEQSLFEALQQAQQSLNDAKGRESGSLMSLRDAESALEKAQNDWRGKSKDTGFAEPDQVKKSLLPRERAEEMKREID
EFLDSSKQLSANIRRVTDKLAGRRVTEEEWTASVSLMEQAEAESGAAKEEKGAQAKAFAVMQKQHKRFKEIEAELKSWQT
QIDRLDKLQSVCKGNTFVEFLAEEQLESVARDASARLGALTRQRYAILVDSEGGFVMRDDANGGVKRPVSSLSGGETFLT
SLSLALALSAQIQLRGQYPLQFFFLDEGFGTLDQGLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPSEPGG
KGTRVTMEIM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=487595 KEF49_RS05175 WP_212100866.1 1054728..1058120(+) (sbcC) [Bacillus amyloliquefaciens strain Ba13]
ATGAAGCCGATTCTGTTAACGATAAAAGGACTCCACAGCTTCAGAGAGGAACAGACCATTGACTTTGACGGACTGTCCGG
TGCCGGGGTGTTCGGAATTTTCGGCCCGACGGGAAGCGGAAAGTCGTCGATCCTTGATGCGATGACACTCGCTCTATACG
GAAAAGTGGAGCGCGCCGCAAATAATACGCACGGCATTCTGAACCATGCCGAAGATCAGCTCGCCGTTTCTTTTACATTC
GCGCTTCAATCCGGCCACAGGGTATCCTACAAAGTAGAGCGTGTTTTTAAGAGAACGGATGAAACGAAAGTGAAAACCGC
CCTCTGCCGCTTAATTGAAATCAAAGAGGAACAAACCGTGCTTGCCGATAAAGCGAATGAAGTGAACAAAAAGGTGGAAG
AGCTTCTTGGTCTGACCATTGACGACTTTACAAGAGCCGTCGTGCTCCCGCAAGGAAAGTTTGCCGAGTTTCTGTCGCTG
AAAGGCGCGGAAAGAAGACATATGCTGCAGCGCCTTTTTAATCTGGAACAGTACGGTGACAGGCTTGTCAAAAAATTGCG
GCGTCGGGCGCAGGAAGCGGCCGCGAAAAAAAATGAGATGCTGGCCGAACAATCCGGCCTCGGAGACGCGGGGGAAGACG
CGCTGAAGCTGGCTGAACAGCAGTTTCACGAAGCGAATGAACGGCTTGAAGCAGCTGAGAAGAAACGGGTCCAAGCAAGA
GAACGTTTTGAGAACCACCAGGAGATTTGGAACCTGCAGACAGAGAGAAACGAATATGAGGCGCGGCAGGAAAAGCTTGA
GGAAAAACGCCCGTATATCACGGGTTTGACTGACCGTCTTAAAGAAGCGGAAACCGCTCTCGCTCTTGAGCCGTATGCAG
ATCGCTACACGGAAGCCGTCCGCCGGAAGGAGCGTGCCGAGCAGGAGCACGAACTGGCCAAACGGAAATTAGAGGCGGAA
ACCGCTTCATTTACGCGGCAAAATGAAGCCTATGAAGCGTGGCGGGTCCATAAGGCTGAACAAGAGCCGAAACTTGTCAA
GGAAGAAGAATTGTATCAAAGGCTGTCAGCCATTGAACAAAAGCTGCTTGAAGCAAAAAAAGAAGCGGAAAAAACAAAGG
CGGAGCACAGCAAAAAAGAGGAAGAATACGAAGCCGCCTCGAAACAGCTGACCGCAGTGAAAGACCGCCTGGCCCGCGGC
AAAAACAGGCAGAATGAGCTGAAAGAAGAGCTGAAAGCAGTGCAAGTGACCGCTGATGAACGGAAAAAATGCCAGACCGC
CGCACAGCTGGCAGCCGGCTTTCAGCAGACACAGGAACAAATCACGAAAGAACGGACCAATCTGACAGCCCAGTTGAAAA
ACATGGAGAAGCTGAACGGAGAAAGCGAGGCGCTCAGCGCAAAGGCGAAATCGGAAGAAGAGGACATTACGCGCGCTTAT
CAAACGCTTCAAACCGTTTACCATATGGTCTGTGAAACGGAACGTTCACTGAAAGCCGCAGCCGAACGGGCGGACAAAAT
GCAAGCCGACCTGCGCAAGCGCTCAGAGGAAGCGAGAACGGCTGCATTAACAAAAGAATTATCGGAAAAACTAATCGAAG
GAAAACCTTGTCCTGTATGCGGCTCGACGCAGCATGACCGTTCGCGCTCCGCTCATGAAACATATTCGCCCGATACGGCT
GTACAGGAACGTTTGCAGCAGGTTGAAGCGCTGCTTTCTGAAGCGGCGGCTCTTTCTCAGGAAGTGCTGACGGCCAAGGT
TGCATTAGAAGAGCAGTCGGGGCGTTTTACCGAAGAATGTCCGTTTCTGCAAAGCGCCCGGGTCCCGGAGCTGGAAGCCG
CTTCTTCCATCAGCGGCCGCCCGCTTGATGAAGCGTTCAGCGCCGTCCGCCTGGAGTGGAAGCAAATGAAACAGGATATG
CTGTCGGTAAGAGAGAAGGTCACGAGATTGATCAGCACGTATCAGCAGACGGTGAAACAAGCTGAGCAGCTGGCCGAACG
AATCCGCTATGAGGAAAAAGAAGCAGACCGCCTCAGACATTCATTAGAAGAGCTCGAATCGCTGTCAGAAAGCCGCTTGA
ATCAGTATAACGAAGCCTGCGGGGATATTCCGTTAAGCCGGATTGACGCCTGGCAGGCTTCGATAGACGATAAGGACAGG
CAGGCAGAGGAATTCGAGAAGCGCATTGAAACAAGCATCGCATTCCTCAAGGAACATGAAGATGAGAAAGAACGGCTGCA
GGAGAAGAAGCATCAGCTTGAACGGGAACGGCTCGAGCTTCACTATGCGTCAGAGCGCCTGCAACAGGTCATTGACGGAT
ATGAACAAGAGCTCGGAACAGCAGCTGAAGAAACATCCATTTCTGCAAAGCTTGACGCGGTGCGGCAGGAATTACAGCTG
TTAAAATCGAAAGAACAGTCCTTATTCGAAGCGCTGCAGCAGGCTCAGCAATCACTGAATGACGCAAAAGGCCGGGAATC
CGGGAGCCTCATGTCACTGCGGGACGCTGAGTCCGCCCTTGAGAAAGCCCAAAATGACTGGCGCGGGAAATCAAAAGACA
CCGGGTTTGCCGAGCCGGATCAAGTCAAAAAAAGCCTGCTTCCGAGAGAGCGGGCCGAGGAAATGAAAAGAGAAATTGAT
GAATTTCTGGACAGCTCAAAGCAGCTTTCGGCAAATATCCGCCGTGTCACTGATAAATTAGCCGGCCGCCGGGTAACGGA
AGAAGAATGGACAGCATCGGTTTCTCTGATGGAGCAGGCAGAGGCTGAGTCAGGCGCTGCCAAGGAGGAAAAAGGAGCCC
AGGCAAAAGCCTTTGCGGTGATGCAAAAACAGCATAAGCGCTTTAAAGAGATTGAAGCCGAACTGAAAAGCTGGCAGACA
CAGATTGACAGGCTTGATAAGCTCCAGTCTGTATGTAAAGGCAATACATTCGTCGAATTTTTAGCGGAGGAACAGCTGGA
AAGCGTGGCCCGAGACGCCTCTGCCCGGCTTGGAGCGCTGACAAGACAGAGGTATGCCATATTAGTCGATTCAGAAGGCG
GATTTGTCATGCGCGATGACGCGAATGGCGGCGTCAAACGCCCTGTATCAAGCCTTTCCGGCGGTGAGACGTTTCTGACA
TCGCTGTCGCTTGCGCTTGCCTTGTCCGCCCAGATTCAGCTGCGGGGGCAATATCCGCTGCAATTCTTTTTCTTAGATGA
AGGATTCGGAACGCTTGACCAAGGGCTTTTAGACACCGTTGTCACAGCGCTGGAAAAGCTGCAATCGGATAATTTGTCCG
TCGGGGTGATCAGCCATGTGCAGGAGCTCAGAGCGCGGCTGCCGAAAAAATTAATCGTTCATCCGTCCGAACCGGGCGGA
AAAGGCACCCGGGTCACAATGGAGATCATGTAG

Domains

Predicted by InterProScan.

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1017-1085)

AAA domain (AAA_23)

(6-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

64.248

100

0.642