Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   KEF49_RS04830 Genome accession   NZ_CP073635
Coordinates   983807..986692 (+) Length   961 a.a.
NCBI ID   WP_115997904.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 978807..991692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS04805 (KEF49_04805) - 979243..980010 (+) 768 WP_065981072.1 enoyl-CoA hydratase -
  KEF49_RS04810 (KEF49_04810) - 980035..980220 (-) 186 WP_014469992.1 YhzD family protein -
  KEF49_RS04815 (KEF49_04815) - 980326..981222 (+) 897 WP_115997903.1 ABC transporter ATP-binding protein -
  KEF49_RS04820 (KEF49_04820) - 981215..982474 (+) 1260 WP_065981075.1 ABC transporter permease -
  KEF49_RS04825 (KEF49_04825) - 982587..983810 (+) 1224 WP_065981076.1 DNA repair exonuclease -
  KEF49_RS04830 (KEF49_04830) sbcE 983807..986692 (+) 2886 WP_115997904.1 AAA family ATPase Machinery gene
  KEF49_RS04835 (KEF49_04835) yhaM 986766..987710 (+) 945 WP_045507300.1 3'-5' exoribonuclease YhaM -
  KEF49_RS04840 (KEF49_04840) - 987826..988053 (+) 228 WP_065981078.1 sporulation YhaL family protein -
  KEF49_RS04845 (KEF49_04845) - 988092..988949 (-) 858 WP_045507298.1 peptidylprolyl isomerase -
  KEF49_RS04850 (KEF49_04850) - 989108..989194 (+) 87 WP_016938346.1 YjcZ family sporulation protein -
  KEF49_RS04855 (KEF49_04855) yhzE2 989318..989404 (+) 87 WP_013351705.1 sporulation protein YhzE2 -
  KEF49_RS04860 (KEF49_04860) - 989461..989679 (-) 219 WP_003155245.1 hypothetical protein -
  KEF49_RS04865 (KEF49_04865) - 989740..990270 (-) 531 WP_065981079.1 DUF3267 domain-containing protein -
  KEF49_RS04870 (KEF49_04870) - 990481..990822 (+) 342 WP_003155243.1 YhaI family protein -
  KEF49_RS04875 (KEF49_04875) - 990819..991430 (-) 612 WP_014469997.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 961 a.a.        Molecular weight: 109947.82 Da        Isoelectric Point: 6.8014

>NTDB_id=487588 KEF49_RS04830 WP_115997904.1 983807..986692(+) (sbcE) [Bacillus amyloliquefaciens strain Ba13]
MKITALYIYQYGKFSNRSFQLSDSPVQVIYGLNEAGKTTLMSFIKSVLFGFPKSKKYEPKTGGVYGGVVELNHDDYGAVK
IERTKGAAEKVRVYTASGEIKDGEWLKQLLSDTDRTLYEAIYSFDVFGLQEIQAFNRDKIGEFLLFSSLFGSEAAAKLDG
RLAKELDRMYKPNGRNPRLNQELDTLKRLSAKLKQAEAAEAGYHSLLEEKKSAGGCLQDAKAQLKDITEEIKTVKAAIEA
KPLADKKTALESELSSYPEALEQFPKNGMHQLEKYESHLHPKAARLEGLRAKAAEIKRQADLLSPNEDMLQKERQLQELS
GEQHMYESRGEQLAAIQLQIRQTSARVSSGLQQLGGRHEEDGILSLNTDYEYEWQLQEAVQSAGQARERKTQLDSLFEQA
RLELEDAERKHAVTSENVLDPAVRKEKEDALQAYKQTAVTEGNEWQAHLRQLEKQRAKQKKLFVGAGILFIAIFVMLKEW
LPAALFTGALMLYVLTGMQKAPPSERSRPGHEKQKSPISKEAADLLQEELWRDGQHRQQLIADQAVLEQKEAAYERVIRQ
YEEWEAEMAPSEKKAEHFMKELGFSGSPSHLLDAYHVMKDVKKEILTKHELTIEAGRLQKLQRAFEERVKKLSPSDGREL
SVKERLHFLLQQAERAREDAKRKQALETDLLHAQEQIRELNEEVHYYEQQVKQLFTAAGAKNREHFCELARLNESRRETE
RELREIKTHLSGIGGTQLEPYMSRTVPELEHTAVQKEQEKETLEEKIANLREQIALLTVKQEQLEYSGLVSDLKQQTEMQ
KERVKKTAKEWAALQTVRHIIREKMERHKKVTLPRLLETAGSLYGPLTDGRYQKLYFSEADDSIMVMQKDGTVFSASELS
QAACEQLYAAIRFALASERESAVSLPFLLDDSFVHFDRERLKRLFDVLNQLSEGGRQILYFTCHEHVSRSFHSGQVMRLL
S

Nucleotide


Download         Length: 2886 bp        

>NTDB_id=487588 KEF49_RS04830 WP_115997904.1 983807..986692(+) (sbcE) [Bacillus amyloliquefaciens strain Ba13]
ATGAAAATAACGGCGCTCTATATTTACCAGTATGGAAAATTTTCCAATCGAAGCTTTCAGCTGTCGGATTCCCCCGTACA
AGTCATCTACGGATTAAATGAAGCGGGCAAAACGACATTGATGTCCTTTATCAAAAGCGTGCTGTTCGGTTTCCCGAAAT
CAAAAAAATACGAACCGAAAACCGGCGGGGTTTACGGCGGCGTTGTGGAACTGAATCATGACGATTACGGTGCTGTCAAA
ATCGAACGGACAAAAGGGGCTGCCGAAAAAGTCAGAGTGTATACGGCTTCAGGCGAAATCAAGGATGGAGAATGGCTCAA
ACAGCTGCTTTCCGATACAGATCGCACGCTGTACGAAGCGATCTATTCGTTTGATGTATTCGGACTCCAGGAGATTCAAG
CCTTTAACCGAGACAAAATCGGGGAGTTTCTCCTGTTTTCCAGCTTATTCGGGTCTGAAGCGGCGGCGAAGCTTGACGGC
AGACTGGCGAAAGAACTTGACAGAATGTATAAGCCGAACGGGCGGAACCCCCGCTTAAATCAGGAATTGGATACATTAAA
GCGGCTCAGCGCCAAGCTGAAACAGGCGGAAGCTGCGGAAGCGGGCTATCACAGCCTCCTAGAAGAGAAAAAAAGCGCCG
GCGGCTGTTTGCAGGATGCCAAAGCGCAATTGAAAGATATAACTGAAGAAATCAAAACAGTAAAAGCGGCGATAGAAGCA
AAGCCGCTTGCGGACAAAAAAACAGCGCTGGAAAGCGAACTTTCTTCATATCCGGAAGCATTGGAGCAATTCCCGAAGAA
CGGAATGCATCAGCTCGAAAAATACGAATCACATCTCCATCCGAAAGCGGCCCGGCTTGAGGGGCTTCGGGCAAAAGCGG
CTGAAATCAAACGGCAGGCTGACCTGCTCTCTCCAAATGAGGACATGTTACAAAAAGAGCGGCAGCTGCAGGAGCTTTCC
GGCGAGCAGCATATGTACGAATCACGCGGCGAACAGCTTGCCGCCATCCAATTACAGATCCGGCAGACATCAGCCCGTGT
TTCTTCAGGATTACAGCAGCTCGGCGGCAGACATGAGGAAGACGGCATTCTATCGCTGAACACCGATTATGAATATGAAT
GGCAGCTGCAAGAAGCCGTGCAGAGCGCCGGACAGGCAAGAGAAAGAAAAACACAGCTTGACTCTCTATTTGAACAAGCA
CGGCTGGAGCTGGAAGACGCCGAACGAAAACATGCCGTGACGTCGGAAAACGTCTTGGATCCCGCTGTCAGAAAAGAAAA
AGAAGACGCCTTACAAGCATATAAACAAACGGCTGTTACTGAAGGAAACGAATGGCAGGCTCATCTCCGGCAGCTGGAAA
AACAGCGCGCCAAACAAAAAAAGCTCTTTGTCGGTGCGGGTATTCTGTTCATTGCGATTTTCGTTATGTTAAAGGAATGG
CTGCCCGCCGCCCTTTTTACCGGCGCTCTGATGCTGTACGTGCTGACTGGCATGCAAAAGGCGCCGCCGTCAGAAAGAAG
CCGGCCCGGTCACGAGAAGCAGAAGTCCCCGATCTCAAAAGAAGCGGCTGATCTTCTGCAGGAAGAGCTATGGCGTGACG
GCCAGCACCGCCAGCAGCTGATTGCGGATCAAGCGGTGCTTGAACAGAAAGAAGCGGCATATGAAAGAGTCATCCGCCAA
TATGAAGAATGGGAAGCCGAAATGGCGCCCTCTGAAAAAAAGGCGGAACATTTTATGAAGGAACTGGGGTTTTCGGGCAG
CCCGTCTCATCTTCTCGACGCATATCATGTGATGAAAGATGTCAAAAAAGAAATCCTTACCAAGCATGAGCTGACCATTG
AAGCGGGCCGGCTGCAAAAACTGCAAAGAGCGTTTGAGGAACGGGTCAAAAAGCTGAGTCCTTCAGACGGCCGGGAGCTG
TCCGTAAAAGAAAGGCTGCACTTTTTGCTGCAGCAGGCGGAACGGGCCCGTGAAGACGCAAAACGAAAACAGGCGCTCGA
AACGGACCTGCTGCATGCACAAGAGCAAATCCGTGAATTAAACGAAGAAGTTCATTACTACGAACAGCAGGTCAAACAGC
TTTTTACAGCCGCAGGGGCAAAAAACCGTGAACACTTTTGTGAACTCGCCAGGCTGAATGAAAGCCGCCGGGAAACAGAG
AGGGAGCTGCGCGAAATCAAAACGCACTTATCCGGCATAGGCGGAACACAGCTGGAGCCGTACATGAGCCGCACAGTGCC
CGAACTTGAACATACAGCCGTTCAGAAAGAACAAGAGAAAGAAACACTTGAGGAAAAAATCGCCAATCTCCGTGAGCAGA
TCGCTTTACTAACGGTGAAACAAGAACAGCTGGAGTACTCGGGGCTGGTATCCGATTTAAAACAGCAGACAGAAATGCAG
AAAGAACGCGTTAAAAAAACAGCTAAAGAGTGGGCCGCATTGCAGACGGTCAGACACATCATCAGAGAAAAAATGGAGCG
GCATAAAAAAGTGACGCTTCCCCGTCTGTTGGAAACCGCAGGTTCATTATACGGACCGCTCACGGACGGACGCTATCAGA
AATTGTATTTCTCTGAGGCTGATGACTCCATTATGGTCATGCAGAAAGACGGTACGGTTTTTTCTGCAAGCGAGCTGTCA
CAGGCGGCATGCGAGCAGCTTTATGCGGCGATCCGTTTTGCCCTTGCGTCAGAACGGGAATCTGCGGTATCACTTCCGTT
TTTACTTGATGACAGTTTTGTTCATTTTGACAGGGAGCGGCTGAAGCGGCTGTTTGATGTGCTGAACCAGCTTTCAGAAG
GCGGACGTCAGATTCTTTATTTCACCTGCCATGAGCATGTAAGCCGCTCATTTCACAGCGGGCAAGTCATGCGGCTCCTG
TCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(1-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

57.911

100

0.583