Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   KEF49_RS03730 Genome accession   NZ_CP073635
Coordinates   778824..779540 (+) Length   238 a.a.
NCBI ID   WP_115998055.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 773824..784540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS03700 (KEF49_03700) - 774003..774380 (+) 378 WP_065521592.1 DUF1992 domain-containing protein -
  KEF49_RS03705 (KEF49_03705) - 774390..774821 (-) 432 WP_212100637.1 Hsp20/alpha crystallin family protein -
  KEF49_RS03710 (KEF49_03710) - 774837..775079 (-) 243 WP_013351373.1 spore germination protein -
  KEF49_RS03715 (KEF49_03715) - 775094..775354 (-) 261 WP_007408496.1 spore germination protein -
  KEF49_RS03720 (KEF49_03720) treP 775624..777039 (+) 1416 WP_014469890.1 PTS system trehalose-specific EIIBC component -
  KEF49_RS03725 (KEF49_03725) treC 777115..778800 (+) 1686 WP_212100640.1 alpha,alpha-phosphotrehalase -
  KEF49_RS03730 (KEF49_03730) treR 778824..779540 (+) 717 WP_115998055.1 trehalose operon repressor Regulator
  KEF49_RS03735 (KEF49_03735) - 779673..780338 (+) 666 WP_065980936.1 NAD(P)H-dependent oxidoreductase -
  KEF49_RS03740 (KEF49_03740) - 780374..781135 (-) 762 WP_013351379.1 YibE/F family protein -
  KEF49_RS03745 (KEF49_03745) - 781132..782271 (-) 1140 WP_212100644.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27456.54 Da        Isoelectric Point: 7.3799

>NTDB_id=487581 KEF49_RS03730 WP_115998055.1 778824..779540(+) (treR) [Bacillus amyloliquefaciens strain Ba13]
MKVNKYITIYKDMVQQIESGMRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LVSFKELSETLGKETKTTVHRLGLIPPPAEAAKELGTKADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEEELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=487581 KEF49_RS03730 WP_115998055.1 778824..779540(+) (treR) [Bacillus amyloliquefaciens strain Ba13]
ATGAAAGTGAATAAATACATCACAATCTATAAAGACATGGTGCAGCAAATTGAAAGCGGCATGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCAAGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGGTCAGCTTCAAGGAGCTTTCGGAAACGCTCGGAAAAGAGACGAAAACGACGGTTCACCGTCTCGGGCTGATTCCGCC
TCCCGCCGAAGCCGCAAAAGAGCTTGGCACAAAGGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGGCGGATTGACG
GAGAACACATTATTTTGGACAAGGATTACTTTGTGAAAAAGCACGTTCCTCTTTTGACGAAGGCGATTTGCGAAGATTCG
ATTTACGAGTATCTCGAAGAAGAACTCGGCCTGTCAATCAGCTACGCGCAAAAAGAAATTGTCGTGGAGCCGGCAGGGGA
AGAAGACCGGAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGTGTGTTTTTGGAGGACACCA
GCCTCTTTCAATATACGGAAAGCCGGCACAGGCTCGATAAATTTCGTTTCGTTGACTTTGCAAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424