Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   KEF49_RS02195 Genome accession   NZ_CP073635
Coordinates   465071..465505 (+) Length   144 a.a.
NCBI ID   WP_003156263.1    Uniprot ID   A0A9P1JEY0
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 460071..470505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS02165 (KEF49_02165) - 460734..461597 (+) 864 WP_065980733.1 SDR family oxidoreductase -
  KEF49_RS02170 (KEF49_02170) - 461610..462113 (+) 504 WP_212100341.1 D-lyxose/D-mannose family sugar isomerase -
  KEF49_RS02175 (KEF49_02175) - 462200..462823 (+) 624 WP_212100344.1 GNAT family protein -
  KEF49_RS02180 (KEF49_02180) - 462830..463252 (+) 423 WP_013351046.1 pyridoxamine 5'-phosphate oxidase family protein -
  KEF49_RS02185 (KEF49_02185) - 463752..464561 (+) 810 WP_115998293.1 lipid II flippase Amj family protein -
  KEF49_RS02190 (KEF49_02190) - 464606..464896 (-) 291 WP_013351048.1 DUF3817 domain-containing protein -
  KEF49_RS02195 (KEF49_02195) lrpC 465071..465505 (+) 435 WP_003156263.1 Lrp/AsnC family transcriptional regulator Machinery gene
  KEF49_RS02200 (KEF49_02200) - 465570..467756 (+) 2187 WP_065980736.1 DNA topoisomerase III -
  KEF49_RS02205 (KEF49_02205) - 467989..469074 (+) 1086 WP_115998191.1 lipoprotein YdaJ -
  KEF49_RS02210 (KEF49_02210) - 469055..469903 (+) 849 WP_115998190.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16474.10 Da        Isoelectric Point: 8.6776

>NTDB_id=487578 KEF49_RS02195 WP_003156263.1 465071..465505(+) (lrpC) [Bacillus amyloliquefaciens strain Ba13]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=487578 KEF49_RS02195 WP_003156263.1 465071..465505(+) (lrpC) [Bacillus amyloliquefaciens strain Ba13]
ATGAAACTAGATAATGTTGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCTATGCGGGAGCTTGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGGCAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCCGTTTCCTGTATTGTTGAAGCGACGGTGAAAAACGGAAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGCGCGGCGTGTTATATGCTGAAGAT
TAACGCGGACAGCCTGGAAACGATCGAACACTTCATTAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAGAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JEY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

81.56

97.917

0.799