Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   IF782_RS13705 Genome accession   NZ_CP062312
Coordinates   2762474..2763190 (-) Length   238 a.a.
NCBI ID   WP_000688498.1    Uniprot ID   Q2VG52
Organism   Staphylococcus aureus strain NAS_OP_163     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2757474..2768190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF782_RS13685 (IF782_13630) - 2758566..2759516 (+) 951 WP_000790323.1 LacI family DNA-binding transcriptional regulator -
  IF782_RS13690 (IF782_13635) - 2759665..2761149 (+) 1485 WP_000141413.1 glycoside hydrolase family 32 protein -
  IF782_RS13695 (IF782_13640) - 2761146..2762105 (+) 960 WP_001253302.1 carbohydrate kinase -
  IF782_RS13700 (IF782_13645) - 2762293..2762402 (-) 110 Protein_2662 hypothetical protein -
  IF782_RS13705 (IF782_13650) agrA 2762474..2763190 (-) 717 WP_000688498.1 LytTR family DNA-binding domain-containing protein Regulator
  IF782_RS13710 (IF782_13655) - 2763209..2764501 (-) 1293 WP_239794326.1 GHKL domain-containing protein -
  IF782_RS13715 (IF782_13660) - 2764526..2764666 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide -
  IF782_RS13720 (IF782_13665) agrB 2764663..2765232 (-) 570 WP_001105707.1 accessory gene regulator AgrB -
  IF782_RS14130 (IF782_13670) - 2765468..2765602 (+) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  IF782_RS13730 (IF782_13675) - 2766202..2766987 (-) 786 WP_000867952.1 carbon-nitrogen family hydrolase -
  IF782_RS13735 (IF782_13680) - 2767348..2767974 (-) 627 WP_000522377.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27933.91 Da        Isoelectric Point: 6.0927

>NTDB_id=487558 IF782_RS13705 WP_000688498.1 2762474..2763190(-) (agrA) [Staphylococcus aureus strain NAS_OP_163]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSRDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=487558 IF782_RS13705 WP_000688498.1 2762474..2763190(-) (agrA) [Staphylococcus aureus strain NAS_OP_163]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAGAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCGCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2VG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996