Detailed information NTG0487495

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KD735_RS05265
• Genome accession: NZ_CP073624
• Coordinates: 1095981..1096973 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AW1.7
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1090981..1101973

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KD735_RS05235 (KD735_05190)	ispD	1091042..1091752 (+)	711	WP_000246137.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KD735_RS05240 (KD735_05195)	ispF	1091752..1092231 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KD735_RS05245 (KD735_05200)	truD	1092228..1093277 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KD735_RS05250 (KD735_05205)	surE	1093258..1094019 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KD735_RS05255 (KD735_05210)	pcm	1094013..1094639 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KD735_RS05260 (KD735_05215)	nlpD	1094824..1095918 (+)	1095	WP_311238038.1	murein hydrolase activator NlpD	-
KD735_RS05265 (KD735_05220)	rpoS	1095981..1096973 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KD735_RS05270 (KD735_05225)	ygbN	1097067..1098431 (-)	1365	WP_000104466.1	GntP family transporter	-
KD735_RS05275 (KD735_05230)	ygbM	1098520..1099296 (-)	777	WP_001136936.1	HPr family phosphocarrier protein	-
KD735_RS05280 (KD735_05235)	ygbL	1099301..1099939 (-)	639	WP_001278994.1	aldolase	-
KD735_RS05285 (KD735_05240)	otnK	1099936..1101198 (-)	1263	WP_000590398.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=487495 KD735_RS05265 WP_000081550.1 1095981..1096973(+) (rpoS) [Escherichia coli strain AW1.7]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=487495 KD735_RS05265 WP_000081550.1 1095981..1096973(+) (rpoS) [Escherichia coli strain AW1.7]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715