Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JNUCC32_RS30525 Genome accession   NZ_CP062260
Coordinates   6847346..6847786 (+) Length   146 a.a.
NCBI ID   WP_192570673.1    Uniprot ID   -
Organism   Paenibacillus sp. JNUCC32     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 6842346..6852786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC32_RS30505 (JNUCC32_30505) groES 6843087..6843368 (+) 282 WP_006212454.1 co-chaperone GroES -
  JNUCC32_RS30510 (JNUCC32_30510) groL 6843430..6845058 (+) 1629 WP_009593977.1 chaperonin GroEL -
  JNUCC32_RS31750 - 6845376..6845507 (+) 132 WP_267132934.1 hypothetical protein -
  JNUCC32_RS30515 (JNUCC32_30515) - 6845532..6846077 (+) 546 WP_127589995.1 dihydrofolate reductase family protein -
  JNUCC32_RS30520 (JNUCC32_30520) - 6846680..6846934 (+) 255 WP_192570672.1 hypothetical protein -
  JNUCC32_RS30525 (JNUCC32_30525) nucA/comI 6847346..6847786 (+) 441 WP_192570673.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JNUCC32_RS30530 (JNUCC32_30530) - 6848279..6849136 (+) 858 WP_192570674.1 DUF2935 domain-containing protein -
  JNUCC32_RS30535 (JNUCC32_30535) - 6849157..6849546 (+) 390 WP_192570675.1 YmaF family protein -
  JNUCC32_RS30540 (JNUCC32_30540) - 6849667..6850116 (-) 450 WP_192570676.1 hypothetical protein -
  JNUCC32_RS30545 (JNUCC32_30545) - 6850291..6850530 (-) 240 WP_015737275.1 WGxxGxxG family protein -
  JNUCC32_RS30550 (JNUCC32_30550) - 6850691..6851383 (-) 693 WP_192570677.1 hypothetical protein -
  JNUCC32_RS30555 (JNUCC32_30555) - 6851594..6851758 (+) 165 WP_009593971.1 sporulation protein Cse60 -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16221.24 Da        Isoelectric Point: 4.4746

>NTDB_id=487478 JNUCC32_RS30525 WP_192570673.1 6847346..6847786(+) (nucA/comI) [Paenibacillus sp. JNUCC32]
MKKLFLKFGTVVLSLLLVWLVLNYFPELDDGDVYPPIRGTVVELEFPADKYPETADHIKKAIESGHSDVCTIDRTGAEDN
RSSSLKGIPTKKGYDRDEWPMAMCAEGGDGASVEYIDPSDNRGAGSWVGNYLEGYPDGTQVHFIFR

Nucleotide


Download         Length: 441 bp        

>NTDB_id=487478 JNUCC32_RS30525 WP_192570673.1 6847346..6847786(+) (nucA/comI) [Paenibacillus sp. JNUCC32]
ATGAAAAAGTTATTCTTGAAATTTGGAACAGTGGTCTTATCTTTGTTATTGGTTTGGTTGGTCCTTAATTATTTTCCGGA
GTTAGATGACGGTGATGTATACCCACCAATACGGGGTACCGTTGTCGAATTAGAGTTTCCAGCGGATAAATATCCTGAGA
CGGCGGATCACATAAAAAAGGCCATTGAATCCGGCCATTCCGATGTTTGTACCATTGATCGAACAGGTGCAGAGGATAAC
AGGAGTTCTTCCCTAAAGGGAATCCCTACGAAAAAAGGGTATGATCGGGATGAGTGGCCGATGGCCATGTGTGCCGAAGG
AGGAGACGGTGCAAGTGTCGAATACATAGATCCATCTGACAATCGAGGAGCAGGCAGCTGGGTAGGTAACTATTTGGAGG
GATACCCGGACGGTACCCAGGTACATTTCATTTTTAGATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(51-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

70.874

70.548

0.5