Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JNUCC32_RS27925 Genome accession   NZ_CP062260
Coordinates   6341281..6342648 (+) Length   455 a.a.
NCBI ID   WP_009594669.1    Uniprot ID   A0A1R1AQC1
Organism   Paenibacillus sp. JNUCC32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6336281..6347648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC32_RS27910 (JNUCC32_27910) - 6336611..6337135 (+) 525 WP_009594667.1 hypothetical protein -
  JNUCC32_RS27915 (JNUCC32_27915) - 6337174..6338238 (+) 1065 WP_192570475.1 protein arginine kinase -
  JNUCC32_RS27920 (JNUCC32_27920) clpC 6338358..6340814 (+) 2457 WP_096777181.1 ATP-dependent protease ATP-binding subunit ClpC -
  JNUCC32_RS27925 (JNUCC32_27925) radA 6341281..6342648 (+) 1368 WP_009594669.1 DNA repair protein RadA Machinery gene
  JNUCC32_RS27930 (JNUCC32_27930) disA 6342662..6343738 (+) 1077 WP_009594677.1 DNA integrity scanning diadenylate cyclase DisA -
  JNUCC32_RS27935 (JNUCC32_27935) pssA 6343788..6344522 (+) 735 WP_228468840.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  JNUCC32_RS27940 (JNUCC32_27940) - 6344650..6345045 (-) 396 WP_009594665.1 hypothetical protein -
  JNUCC32_RS27945 (JNUCC32_27945) - 6345326..6346414 (+) 1089 WP_015737636.1 PIN/TRAM domain-containing protein -
  JNUCC32_RS27950 (JNUCC32_27950) ispD 6346491..6347186 (+) 696 WP_090914123.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49595.35 Da        Isoelectric Point: 7.4121

>NTDB_id=487476 JNUCC32_RS27925 WP_009594669.1 6341281..6342648(+) (radA) [Paenibacillus sp. JNUCC32]
MAKTKTKFFCTECGYEAPKWFGKCPGCQSWNSMVEETETVIKTQGMNSPLFHSKEKPLSIINIESGKEPRIQTGIAELNR
VLGGGLVPGSLVLVGGDPGIGKSTLLLQASNRLAQNGIRVLYISGEESVRQTKLRADRLGALSPELFVLCETNLESIEEA
IENVQPGFVVIDSIQTVYLPEVTSAPGSVSQVRECTARFMRLAKVKGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEDGLREVGNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALISTTHFPS
PRRMGTGVDHHRMNLIIAVLEKRMGMYLQTQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDIPTKPYDVIFGEVGLTGE
VRAVSRAEQRVREAEKLGFKRVLMPEKSLKGWKHPKGIQIIGVNTVADALAVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=487476 JNUCC32_RS27925 WP_009594669.1 6341281..6342648(+) (radA) [Paenibacillus sp. JNUCC32]
ATGGCAAAAACTAAGACGAAATTTTTCTGTACCGAATGCGGCTATGAAGCGCCCAAATGGTTCGGAAAATGTCCGGGCTG
CCAATCATGGAATTCCATGGTAGAGGAGACCGAGACGGTAATCAAGACCCAGGGGATGAATTCCCCTCTTTTTCATAGTA
AAGAAAAACCCCTTTCCATCATAAATATAGAAAGCGGTAAAGAACCCAGAATCCAGACGGGCATTGCGGAATTGAACCGG
GTGCTCGGGGGCGGGCTGGTCCCGGGCTCGCTCGTGCTAGTCGGCGGCGATCCCGGCATCGGGAAATCCACGCTCCTGCT
TCAAGCCTCCAACCGACTGGCCCAGAACGGCATTCGCGTTCTGTACATTTCCGGTGAGGAATCCGTGCGCCAGACCAAAC
TGCGCGCTGACCGGCTCGGGGCGCTGTCCCCGGAGCTTTTTGTCCTCTGCGAAACCAATCTGGAATCGATCGAGGAAGCC
ATTGAGAACGTACAGCCTGGCTTCGTTGTCATCGACTCCATTCAGACGGTGTACTTGCCTGAGGTAACCAGCGCGCCGGG
CAGCGTATCCCAGGTTCGGGAATGCACGGCCCGCTTTATGCGGCTGGCGAAGGTGAAAGGCATCGCGACCGTCCTTGTCG
GACATGTGACAAAAGAAGGCGCCATTGCAGGTCCAAGGATGCTGGAGCACATGGTGGATTGTGTGCTTTATTTTGAAGGA
GAGCGTCATCATACTTACCGCTTGCTTCGCGCGGTGAAGAATCGTTTCGGTTCGACGAATGAGATTGGCATTTTTGAGAT
GGGTGAGGATGGGCTTCGGGAAGTCGGGAATCCATCGGAGCTCTTTTTATCCGAACGGCCTTTGGGCGTAGCGGGTTCGA
CCGTAGTTGCAAGCATGGAGGGTACGCGCCCGGTTCTTGTAGAGCTGCAGGCGCTCATCTCCACGACGCACTTCCCGTCA
CCGCGCCGGATGGGCACAGGGGTGGACCATCACCGCATGAACCTGATCATTGCCGTGCTGGAGAAACGGATGGGGATGTA
CCTGCAAACCCAAGACGCCTACCTGAACGTAGCGGGCGGCGTGAAGCTCGATGAACCTGCGGTGGATCTGGCCATTGCGG
TCAGCATCGCATCCAGCTTCCGCGACATACCGACCAAGCCGTACGACGTTATTTTTGGCGAGGTGGGGCTGACCGGCGAG
GTTCGCGCCGTTTCAAGAGCGGAGCAGAGGGTAAGAGAAGCCGAGAAGCTGGGTTTTAAGCGGGTTCTCATGCCGGAGAA
GAGTTTGAAGGGATGGAAGCATCCGAAAGGAATACAAATTATCGGAGTCAACACCGTTGCAGATGCATTAGCGGTTGCGT
TAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(70-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R1AQC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.885

100

0.675
  radA Streptococcus pneumoniae Rx1

59.111

98.901

0.585
  radA Streptococcus pneumoniae D39

59.111

98.901

0.585
  radA Streptococcus pneumoniae R6

59.111

98.901

0.585
  radA Streptococcus pneumoniae TIGR4

59.111

98.901

0.585
  radA Streptococcus mitis NCTC 12261

59.111

98.901

0.585
  radA Streptococcus mitis SK321

58.889

98.901

0.582