Detailed information NTG0487452

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KEW59_RS16325
• Genome accession: NZ_CP073621
• Coordinates: 3448753..3449745 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CE2050
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3443753..3454745

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KEW59_RS16295 (KEW59_16165)	ispD	3443814..3444524 (+)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KEW59_RS16300 (KEW59_16170)	ispF	3444524..3445003 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KEW59_RS16305 (KEW59_16175)	truD	3445000..3446049 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
KEW59_RS16310 (KEW59_16180)	surE	3446030..3446791 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KEW59_RS16315 (KEW59_16185)	pcm	3446785..3447411 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KEW59_RS16320 (KEW59_16190)	nlpD	3447596..3448690 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KEW59_RS16325 (KEW59_16195)	rpoS	3448753..3449745 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KEW59_RS16330 (KEW59_16200)	-	3449866..3450273 (-)	408	WP_001208066.1	MarR family transcriptional regulator	-
KEW59_RS16335 (KEW59_16205)	-	3450420..3451013 (+)	594	WP_001237173.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
KEW59_RS16340 (KEW59_16210)	-	3451013..3452440 (+)	1428	WP_001551547.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
KEW59_RS16345 (KEW59_16215)	-	3452451..3452687 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
KEW59_RS16350 (KEW59_16220)	ygbN	3452726..3454090 (-)	1365	WP_000104457.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=487452 KEW59_RS16325 WP_000081550.1 3448753..3449745(+) (rpoS) [Escherichia coli strain CE2050]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=487452 KEW59_RS16325 WP_000081550.1 3448753..3449745(+) (rpoS) [Escherichia coli strain CE2050]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715