Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   JNUCC32_RS04400 Genome accession   NZ_CP062260
Coordinates   959222..960175 (+) Length   317 a.a.
NCBI ID   WP_192571228.1    Uniprot ID   -
Organism   Paenibacillus sp. JNUCC32     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 954222..965175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC32_RS04375 (JNUCC32_04375) - 955277..955999 (-) 723 WP_096776762.1 class I SAM-dependent methyltransferase -
  JNUCC32_RS04380 (JNUCC32_04380) - 956142..956840 (+) 699 WP_192571225.1 nucleotidyltransferase domain-containing protein -
  JNUCC32_RS04385 (JNUCC32_04385) - 956957..957052 (+) 96 WP_015736424.1 hypothetical protein -
  JNUCC32_RS04390 (JNUCC32_04390) - 957125..957727 (-) 603 WP_192571226.1 YkoF family thiamine/hydroxymethylpyrimidine-binding protein -
  JNUCC32_RS04395 (JNUCC32_04395) - 958097..958699 (-) 603 WP_192571227.1 nitroreductase family protein -
  JNUCC32_RS04400 (JNUCC32_04400) ceuB 959222..960175 (+) 954 WP_192571228.1 ABC transporter permease Machinery gene
  JNUCC32_RS04405 (JNUCC32_04405) - 960165..961112 (+) 948 WP_009589942.1 iron chelate uptake ABC transporter family permease subunit -
  JNUCC32_RS04410 (JNUCC32_04410) - 961109..961867 (+) 759 WP_009589818.1 ABC transporter ATP-binding protein -
  JNUCC32_RS04415 (JNUCC32_04415) - 962073..963044 (+) 972 WP_096776758.1 siderophore ABC transporter substrate-binding protein -
  JNUCC32_RS04420 (JNUCC32_04420) - 963223..964647 (+) 1425 WP_192571229.1 NAD-dependent succinate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34975.35 Da        Isoelectric Point: 9.8266

>NTDB_id=487452 JNUCC32_RS04400 WP_192571228.1 959222..960175(+) (ceuB) [Paenibacillus sp. JNUCC32]
MKIRYLFAAVVVLSIISLFIGVKDISPLELFSMTEQQQHIMLESRIPRLVSLILAGVSMSICGLIMQQLSRNKFVSPTTA
GTMDSARLGILVAMLVFTTSGPLIKMLVAFVFALAGTFIFMKILDRIKFKDAIFIPLVGLMFGNIVSSVATFFAYKYDLI
QNMSAWLQGDFSMIMKGQYEMLYLSIPLVILAYLFANKFTVAGMGEEFATNLGLHYRRVVNLGLVIVALVTASVVLTVGV
IPFLGLIIPNIVSLYLGDHLKKSLSHTALLGAGFVLFCDILGRIIIYPYEIPISLTVGVLGSGIFIFLLMRRKAYDL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=487452 JNUCC32_RS04400 WP_192571228.1 959222..960175(+) (ceuB) [Paenibacillus sp. JNUCC32]
ATGAAGATTAGATACTTATTCGCAGCCGTTGTGGTACTCTCCATAATCTCGTTATTTATTGGAGTTAAAGATATCTCGCC
ACTGGAACTGTTCTCGATGACAGAACAACAACAGCATATTATGCTTGAAAGCCGGATTCCACGGCTTGTCAGCCTCATCT
TGGCGGGTGTCAGCATGAGTATCTGCGGATTGATCATGCAGCAGCTCAGCCGCAACAAGTTCGTATCGCCGACGACGGCG
GGCACTATGGACTCCGCCAGATTGGGGATCTTGGTTGCCATGCTCGTCTTTACGACAAGCGGCCCGCTTATCAAAATGCT
CGTGGCATTCGTATTCGCACTGGCAGGAACCTTTATCTTCATGAAGATACTGGATCGGATCAAGTTCAAGGACGCGATCT
TCATCCCGCTGGTAGGGCTTATGTTCGGTAATATCGTCAGCTCGGTCGCGACCTTCTTTGCCTACAAATATGATCTTATA
CAGAATATGTCGGCTTGGCTGCAGGGCGATTTCTCCATGATCATGAAGGGCCAATATGAAATGCTGTATCTCAGTATCCC
GCTTGTGATTCTGGCTTACCTGTTTGCCAACAAGTTTACGGTAGCCGGAATGGGAGAGGAATTCGCAACCAACCTGGGAC
TTCATTATCGGCGAGTCGTGAACCTGGGATTGGTCATCGTTGCGCTGGTTACGGCTTCCGTTGTGCTGACCGTCGGCGTG
ATTCCGTTCCTTGGTCTGATCATACCTAATATTGTTAGTCTGTACTTAGGGGACCACTTGAAAAAAAGCCTTTCGCATAC
CGCGCTGCTGGGGGCCGGGTTCGTACTGTTCTGTGACATCCTTGGCCGGATCATCATTTATCCCTATGAAATTCCGATTA
GTCTGACCGTGGGCGTACTCGGAAGCGGTATATTCATTTTCTTACTGATGAGGAGAAAGGCTTATGACTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.968

99.369

0.536