Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IHQ43_RS25150 Genome accession   NZ_CP062253
Coordinates   5646027..5647394 (-) Length   455 a.a.
NCBI ID   WP_007950985.1    Uniprot ID   J2XTJ9
Organism   Pseudomonas gozinkensis strain IzPS32d     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5641027..5652394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHQ43_RS25125 - 5641252..5641962 (+) 711 WP_192562465.1 GntR family transcriptional regulator -
  IHQ43_RS25130 yjiA 5642085..5643059 (-) 975 WP_192562466.1 GTPase -
  IHQ43_RS25135 - 5643219..5643416 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  IHQ43_RS25140 - 5643432..5645498 (-) 2067 WP_064382116.1 carbon starvation CstA family protein -
  IHQ43_RS25145 - 5645658..5646026 (+) 369 WP_192562467.1 PilZ domain-containing protein -
  IHQ43_RS25150 radA 5646027..5647394 (-) 1368 WP_007950985.1 DNA repair protein RadA Machinery gene
  IHQ43_RS25155 - 5647538..5649079 (-) 1542 WP_192562468.1 catalase -
  IHQ43_RS25160 mscL 5649365..5649778 (+) 414 WP_192562469.1 large-conductance mechanosensitive channel protein MscL -
  IHQ43_RS25165 - 5649813..5650589 (-) 777 WP_192562470.1 ferredoxin--NADP reductase -
  IHQ43_RS25170 - 5650890..5651597 (+) 708 WP_192562471.1 LuxR C-terminal-related transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48715.17 Da        Isoelectric Point: 6.8987

>NTDB_id=487400 IHQ43_RS25150 WP_007950985.1 5646027..5647394(-) (radA) [Pseudomonas gozinkensis strain IzPS32d]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDSLFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=487400 IHQ43_RS25150 WP_007950985.1 5646027..5647394(-) (radA) [Pseudomonas gozinkensis strain IzPS32d]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGGCAGTGCGGCGAATG
CGGCGCCTGGAACACCCTGACCGAAACCATGGTCGAGAGCGGCGGTGCCGCCGCCCCGAGCGGGCGTACCGGCTGGGCCG
GACAGCAGGCCCAGATCAAGACGCTGGCCGAAGTCAGCATCGAAGAGATTCCGCGTTTCTCCACAGCCTCCGGCGAACTC
GACCGAGTGCTCGGCGGTGGTCTGGTGGACGGCTCGGTGGTATTGATCGGCGGCGACCCCGGCATCGGCAAATCGACGAT
TCTGTTGCAGACCCTGTGCAACCTCGCCAAGAGCATGCCGGCGCTGTACGTCACCGGTGAGGAATCCCAGCAACAGGTCG
CCATGCGCGCGCGCCGCCTGGGCCTGCCACAGGATCAACTGCGGGTCATGACCGAAACCTGCATCGAAACCATCATCGCC
ACCGCCCGTCAGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAACTGCAATCGGCACC
GGGCGGCGTGTCCCAGGTGCGCGAAAGTGCGGCGTTACTGGTGCGCTATGCCAAACAAAGCGGCACTGCGATTTTCCTGG
TGGGCCACGTGACCAAGGAAGGCGCGCTCGCAGGGCCGAGGGTTCTGGAGCACATGGTCGACACCGTTCTGTATTTCGAG
GGCGAGTCCGACGGGCGATTGCGCCTGCTGCGGGCGGTGAAGAACCGTTTCGGCGCGGTCAACGAGTTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTCACCCGCGCTCAGGAAGAAGTCCCGGGCA
GTGTGGTGATGGCAACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTGGATGACAGCCATCTGGCC
AACCCGCGTCGGGTCACGCTGGGTCTGGATCAGAATCGTCTGGCGATGTTACTGGCGGTTCTCCACCGCCATGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTGAAAGTGCTGGAAACCGCGTCCGACCTGGCGTTGA
TGGCGGCAGTCATGTCGAGCCTGCGCAACCGTCCGTTGCCCCATGACTTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAAGTGCGCCCGGTGCCGAGCGGTCAAGAGCGTTTGAAAGAAGCCGCCAAGCACGGTTTCAAGCGCGCTATCGTGCCCAA
GGGCAATGCGCCGAAGGAAGCTCCGCCGGGTTTGCAGATCATTGCGGTGACGCGTCTGGAGCAGGCGCTGGACTCGTTGT
TCGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2XTJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464