Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IF199_RS26010 Genome accession   NZ_CP062252
Coordinates   5667014..5668381 (-) Length   455 a.a.
NCBI ID   WP_039771749.1    Uniprot ID   A0A2N8E079
Organism   Pseudomonas allokribbensis strain IzPS23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5662014..5673381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF199_RS25985 - 5662436..5663131 (+) 696 WP_192559043.1 GntR family transcriptional regulator -
  IF199_RS25990 yjiA 5663145..5664116 (-) 972 WP_192559044.1 GTPase -
  IF199_RS25995 - 5664206..5664403 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  IF199_RS26000 - 5664419..5666485 (-) 2067 WP_096820844.1 carbon starvation CstA family protein -
  IF199_RS26005 - 5666645..5667013 (+) 369 WP_085712214.1 PilZ domain-containing protein -
  IF199_RS26010 radA 5667014..5668381 (-) 1368 WP_039771749.1 DNA repair protein RadA Machinery gene
  IF199_RS26015 - 5668427..5668972 (-) 546 WP_192559045.1 ankyrin repeat domain-containing protein -
  IF199_RS26020 katB 5669024..5670565 (-) 1542 WP_102621111.1 catalase KatB -
  IF199_RS26025 mscL 5670850..5671263 (+) 414 WP_085712217.1 large-conductance mechanosensitive channel protein MscL -
  IF199_RS26030 - 5671297..5672073 (-) 777 WP_192559046.1 ferredoxin--NADP reductase -
  IF199_RS26035 - 5672407..5673120 (+) 714 WP_192559047.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48729.20 Da        Isoelectric Point: 6.8987

>NTDB_id=487371 IF199_RS26010 WP_039771749.1 5667014..5668381(-) (radA) [Pseudomonas allokribbensis strain IzPS23]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKTMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDSLFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=487371 IF199_RS26010 WP_039771749.1 5667014..5668381(-) (radA) [Pseudomonas allokribbensis strain IzPS23]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGGCAGTGCGGCGAATG
CGGCGCGTGGAACACCCTGACCGAAACCATGGTCGAGAGTGGCGGTGCCGCCGCCCCGAGCGGGCGCACCGGCTGGGCCG
GGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCATCGAAGAGATTCCGCGTTTTTCCACAGCCTCCGGCGAGCTG
GACCGAGTGCTCGGCGGTGGTCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGTGATCCGGGTATCGGCAAGTCGACGAT
TCTGTTGCAGACCCTGTGCAACCTCGCCAAGACCATGCCGGCGCTGTACGTCACCGGTGAGGAATCCCAGCAACAAGTGG
CGATGCGCGCACGCCGCCTGGGGTTGCCGCAGGATCAACTGCGGGTCATGACCGAAACCTGCATCGAAACCATCATCGCC
ACCGCCCGTCAGGAAAAACCCAAGGTGATGGTGATCGATTCGATCCAGACGATTTTCACCGAACAACTGCAATCGGCACC
GGGCGGCGTGTCCCAGGTACGCGAAAGTGCGGCGTTGCTGGTGCGTTACGCCAAGCAAAGCGGCACGGCGATTTTCCTGG
TCGGCCACGTCACCAAGGAAGGCGCATTGGCCGGCCCGCGTGTTCTGGAGCACATGGTCGACACTGTGCTGTATTTCGAA
GGCGAGTCCGATGGCCGGTTGCGCCTGCTGCGGGCGGTGAAAAACCGTTTCGGCGCGGTCAACGAGTTGGGTGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCTTCGGCAATTTTTCTCACCCGCGCTCAGGAAGAAGTCCCGGGCA
GTGTGGTAATGGCAACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGTCATCTGGCC
AACCCGCGTCGGGTCACTCTGGGTCTGGATCAGAACCGTCTGGCGATGTTGCTGGCGGTGTTGCATCGCCACGGCGGCAT
TCCGACTCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTGAAGGTGCTGGAAACCGCATCCGACCTGGCGTTGA
TGGCCGCCGTCATGTCGAGTCTGCGCAACCGTCCGTTGCCCCACGATCTGCTGGTGTTCGGCGAAGTCGGTTTGTCTGGT
GAGGTACGTCCGGTGCCGAGCGGTCAGGAGCGTTTGAAGGAAGCGGCCAAGCACGGCTTCAAGCGCGCGATCGTGCCCAA
GGGCAACGCGCCGAAGGAAGCGCCTCCAGGCTTGCAGATCATTGCAGTGACGCGTCTGGAACAGGCGCTGGATTCACTCT
TCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(81-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8E079

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464