Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IF189_RS24485 Genome accession   NZ_CP062251
Coordinates   5461448..5462815 (-) Length   455 a.a.
NCBI ID   WP_114885656.1    Uniprot ID   -
Organism   Pseudomonas sp. IzPS59     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5456448..5467815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF189_RS24460 - 5456747..5457457 (+) 711 WP_192552386.1 GntR family transcriptional regulator -
  IF189_RS24465 yjiA 5457580..5458551 (-) 972 WP_192552387.1 GTPase -
  IF189_RS24470 - 5458641..5458838 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  IF189_RS24475 - 5458854..5460920 (-) 2067 WP_192552388.1 carbon starvation CstA family protein -
  IF189_RS24480 - 5461079..5461447 (+) 369 WP_085712214.1 PilZ domain-containing protein -
  IF189_RS24485 radA 5461448..5462815 (-) 1368 WP_114885656.1 DNA repair protein RadA Machinery gene
  IF189_RS24490 katB 5462959..5464500 (-) 1542 WP_192552389.1 catalase KatB -
  IF189_RS24495 mscL 5464785..5465198 (+) 414 WP_085712217.1 large-conductance mechanosensitive channel protein MscL -
  IF189_RS24500 - 5465231..5466007 (-) 777 WP_134828169.1 ferredoxin--NADP reductase -
  IF189_RS24505 - 5466328..5467041 (+) 714 WP_134828170.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48689.13 Da        Isoelectric Point: 6.8987

>NTDB_id=487343 IF189_RS24485 WP_114885656.1 5461448..5462815(-) (radA) [Pseudomonas sp. IzPS59]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDSLFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=487343 IF189_RS24485 WP_114885656.1 5461448..5462815(-) (radA) [Pseudomonas sp. IzPS59]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGGCAGTGCGGCGAGTG
CGGCGCCTGGAACACCCTGACCGAAACCATGGTCGAGAGCGGCGGTGCCGCCGCCCCGAGCGGGCGCACCGGTTGGGCAG
GGCAGCAAGCCCAGATCAAGACCCTGGCCGAAGTCAGCATTGAAGAGATTCCGCGTTTTTCCACAGCCTCCGGCGAACTG
GACCGAGTACTTGGCGGCGGTCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACGAT
TCTGCTGCAGACCCTGTGCAACCTCGCCAAGAGCATGCCGGCGCTGTACGTCACCGGTGAGGAATCCCAGCAGCAAGTCG
CCATGCGCGCACGTCGACTTGGGCTGCCGCAGGATCAACTGCGGGTCATGACCGAAACCTGCATCGAAACCATCATCGCC
ACCGCCCGCCAGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAACTGCAATCGGCACC
GGGCGGCGTGTCCCAGGTGCGCGAAAGTGCGGCGTTGCTGGTGCGTTACGCCAAGCAAAGTGGCACGGCGATTTTCCTCG
TTGGCCACGTGACCAAGGAAGGCGCATTGGCCGGCCCGCGCGTTCTGGAACACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAGTCCGATGGCCGTTTGCGTCTGCTGCGGGCGGTGAAAAACCGTTTCGGCGCCGTCAACGAGTTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTCACACGCGCTCAGGAAGAAGTCCCGGGCA
GCGTGGTGATGGCAACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGTCACCTGGCC
AACCCGCGTCGGGTCACGCTGGGTCTGGATCAGAACCGTCTGGCGATGTTGCTGGCGGTGCTGCACCGGCATGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTTGGCGGGGTGAAAGTGCTGGAGACCGCGTCCGACCTGGCGCTGA
TGGCTGCCGTCATGTCGAGCCTGCGCAACCGGCCGTTGCCTCATGACTTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAAGTACGCCCGGTGCCGAGCGGTCAGGAGCGTTTGAAGGAAGCCGCCAAGCACGGCTTCAAGCGCGCGATCGTGCCCAA
GGGTAACGCGCCAAAAGAAGCACCGGCAGGGTTGCAGATCATTGCGGTGACGCGTCTGGAGCAGGCGCTGGATTCACTCT
TCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus mitis NCTC 12261

46.087

100

0.466
  radA Streptococcus mitis SK321

46.272

100

0.464