Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KDN44_RS01960 Genome accession   NZ_CP073360
Coordinates   424584..425051 (-) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain EC11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419584..430051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDN44_RS01935 rpsG 419725..420195 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  KDN44_RS01940 fusA 420292..422406 (+) 2115 WP_000124700.1 elongation factor G -
  KDN44_RS01945 tuf 422477..423661 (+) 1185 WP_000031783.1 elongation factor Tu -
  KDN44_RS01950 bfd 423844..424038 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  KDN44_RS01955 bfr 424111..424587 (+) 477 WP_000675515.1 bacterioferritin -
  KDN44_RS01960 pilD 424584..425051 (-) 468 WP_000340171.1 A24 family peptidase Machinery gene
  KDN44_RS01965 rpsJ 425430..425741 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  KDN44_RS01970 rplC 425774..426403 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  KDN44_RS01975 rplD 426414..427019 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  KDN44_RS01980 rplW 427016..427318 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  KDN44_RS01985 rplB 427336..428157 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  KDN44_RS01990 rpsS 428174..428452 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  KDN44_RS01995 rplV 428467..428799 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  KDN44_RS02000 rpsC 428817..429518 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  KDN44_RS02005 rplP 429531..429941 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=487241 KDN44_RS01960 WP_000340171.1 424584..425051(-) (pilD) [Escherichia coli strain EC11]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=487241 KDN44_RS01960 WP_000340171.1 424584..425051(-) (pilD) [Escherichia coli strain EC11]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361