Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   KDH82_RS10335 Genome accession   NZ_CP073350
Coordinates   2388980..2391838 (-) Length   952 a.a.
NCBI ID   WP_211599944.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain LyG-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2383980..2396838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDH82_RS10310 (KDH82_10315) - 2384198..2385142 (+) 945 WP_004585609.1 2-dehydropantoate 2-reductase -
  KDH82_RS10315 (KDH82_10320) - 2385277..2386893 (-) 1617 WP_004585610.1 ABC-F family ATP-binding cassette domain-containing protein -
  KDH82_RS10320 (KDH82_10325) - 2387169..2388188 (-) 1020 WP_005874290.1 NAD(P)-dependent oxidoreductase -
  KDH82_RS10325 (KDH82_10330) - 2388359..2388613 (-) 255 WP_010956522.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  KDH82_RS10330 (KDH82_10335) - 2388702..2388956 (-) 255 WP_004585612.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  KDH82_RS10335 (KDH82_10340) uvrA 2388980..2391838 (-) 2859 WP_211599944.1 excinuclease ABC subunit UvrA Machinery gene
  KDH82_RS10780 - 2392512..2392574 (-) 63 WP_230456045.1 hypothetical protein -
  KDH82_RS10355 (KDH82_10360) - 2392546..2392680 (+) 135 WP_173362823.1 DUF1661 domain-containing protein -
  KDH82_RS10360 (KDH82_10365) - 2392879..2393061 (-) 183 WP_211599946.1 (2Fe-2S)-binding protein -
  KDH82_RS10365 (KDH82_10370) - 2393332..2394606 (-) 1275 WP_013816717.1 DUF2851 family protein -
  KDH82_RS10370 (KDH82_10375) - 2394641..2395726 (-) 1086 WP_004585616.1 mannose-1-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 952 a.a.        Molecular weight: 105762.48 Da        Isoelectric Point: 5.8864

>NTDB_id=487232 KDH82_RS10335 WP_211599944.1 2388980..2391838(-) (uvrA) [Porphyromonas gingivalis strain LyG-2]
MKQQESEHPTSGEAIIIKGARVNNLKNISLTIPRGKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGRMR
KPECDLIAGVPPAIAIEQRVVSRNPRSTVATSTEIYEYLRLLFARVGRTISPTSGEEVKKHTVADLVAYVADRPIGSKLY
LLVGLQAPQGRSLREHLQIQQQQGYTRIFVAGEMKRIEDILSAETDFSDTASCFLLIDRLVIAEDKADYESRLADSAETA
FFEGNGACLLRIESPEGTVEERMFSNVFEADGRTFQEPSPEMFSFNNPIGACPTCEGFGKVMGIDEDLVVPNKSLSVYEE
CVACWIGAKSQMWKDYFIQKSVPLGFPVHKPYKELSDIERDMLWRGVPTGEPDYPSIGIDDYFSMLQRDMHKIQNRVRLA
HFRGKATCPDCRGMRLKPDALCVRIGGRNISELTALTVEETSAFFEGLQLSEDDLHISRRLLEEIGKRLRFLLEVGLGYL
TLDRLSNTLSGGESQRISLATQLGSSLVGSLYVLDEPSIGLHQRDTHRLIGVLKRLRDLGNTVVVVEHDEETIRSADYII
DIGPKAGRQGGEVVYAGEYDRIDKDTPGYTAAYLTGREKIELPRLRRPWNSYIEVREASKHNLKGVNVRFPLHVLAVVTG
VSGSGKSTLVRDLFYEGVKRTLEGGSTQGLACEGIVGDIKSVRDIQYVDQNNFGRSTRSNPVTYIGAYDDIRKLYSALPL
SKQMGYQPYFFSFNKEGGRCEVCKGEGSIVVEMQFMADIVLECEECHGKRFRKEILDVEYCGANIYDLLEMTVNQAVEFF
TDHPKAGYTDKIVEKLECLREVGLGYLKLGQSSSTLSGGENQRVKLAAYLGQAKPAPTLFIFDEPTTGLHIHDIRTLLHA
LSALIDKGHSVVVVEHNMEMIKSADCIIDLGPEGGGAGGYLVATGTPEEVIRYDASYTGKWLKEILGNEQRG

Nucleotide


Download         Length: 2859 bp        

>NTDB_id=487232 KDH82_RS10335 WP_211599944.1 2388980..2391838(-) (uvrA) [Porphyromonas gingivalis strain LyG-2]
ATGAAGCAGCAGGAAAGCGAGCATCCCACAAGTGGCGAAGCCATCATCATCAAAGGGGCACGCGTCAATAATCTGAAGAA
TATATCGCTGACTATACCGCGGGGCAAGCTGGTCGTGGTGACCGGACTATCCGGTTCGGGCAAGAGTTCTTTGGCTTTCG
ATACGCTCTATGCGGAAGGCCAGAGACGTTACGTGGAGAGCCTGTCTGCCTATGCGCGTCAGTTTCTGGGAAGGATGCGC
AAGCCGGAGTGCGACTTGATCGCCGGTGTGCCTCCTGCCATTGCCATCGAGCAACGCGTGGTAAGCCGCAATCCGAGGAG
TACCGTAGCCACATCGACCGAGATATACGAGTACCTGCGCCTGCTCTTTGCTCGCGTAGGCAGGACCATCTCTCCGACAA
GCGGAGAGGAGGTGAAGAAACATACGGTGGCCGATCTGGTCGCTTACGTTGCCGATCGGCCCATCGGCTCCAAACTGTAT
CTTCTGGTAGGGCTGCAAGCCCCTCAAGGACGTAGTCTGCGTGAGCACTTGCAGATCCAACAGCAGCAGGGCTATACGCG
CATTTTCGTTGCCGGGGAGATGAAGCGGATCGAGGACATTTTATCCGCCGAAACTGATTTCTCCGATACGGCCTCCTGCT
TCCTGCTTATCGATCGGCTGGTGATTGCAGAGGACAAGGCGGACTATGAGTCGCGTCTTGCGGATTCGGCCGAGACAGCT
TTTTTCGAAGGAAACGGGGCGTGCCTGCTGCGCATCGAAAGCCCGGAAGGAACGGTGGAGGAACGGATGTTCAGCAATGT
GTTCGAAGCCGATGGGCGTACCTTTCAGGAGCCGAGTCCGGAGATGTTCAGCTTCAACAATCCTATCGGGGCATGCCCTA
CTTGCGAAGGTTTCGGGAAGGTAATGGGGATCGATGAGGATCTGGTGGTACCGAACAAGTCTCTCTCTGTCTATGAAGAA
TGTGTAGCTTGCTGGATAGGGGCCAAGTCGCAGATGTGGAAGGACTATTTCATCCAAAAGAGTGTGCCACTGGGTTTTCC
CGTACACAAGCCCTACAAAGAGCTATCCGATATCGAACGCGATATGCTGTGGCGTGGTGTACCCACGGGAGAACCGGATT
ACCCGAGTATCGGTATCGACGACTATTTCTCTATGCTGCAGAGGGATATGCACAAGATTCAGAACCGTGTCCGGCTGGCG
CATTTTCGTGGCAAAGCCACCTGCCCCGATTGTCGTGGGATGCGACTCAAGCCGGATGCTCTGTGCGTGAGAATAGGCGG
ACGGAATATATCGGAACTGACGGCTCTGACTGTAGAGGAGACGTCGGCATTTTTCGAGGGGCTACAGCTATCGGAAGACG
ATCTACATATAAGCAGACGGCTGCTGGAGGAGATAGGCAAGCGGCTACGCTTCCTGCTCGAAGTGGGGTTGGGGTATCTG
ACACTTGACCGCCTGTCCAATACGCTCTCGGGTGGAGAGAGCCAGCGCATCAGTCTGGCTACGCAGCTCGGCAGCAGCTT
GGTGGGTTCGCTCTACGTGCTGGACGAGCCGAGTATCGGTCTGCATCAGCGAGATACGCATCGGCTTATCGGTGTTCTGA
AGCGACTGCGCGATCTGGGCAATACCGTTGTAGTCGTCGAGCATGACGAGGAGACAATCCGGTCAGCTGATTATATCATC
GACATAGGGCCGAAGGCCGGCCGCCAAGGCGGCGAAGTGGTCTATGCCGGCGAGTATGACCGCATAGACAAGGATACTCC
GGGCTATACGGCGGCTTATCTGACGGGACGAGAGAAGATCGAACTGCCACGCCTGCGTCGTCCATGGAACTCATATATCG
AAGTTCGGGAAGCCTCGAAGCACAATCTGAAAGGGGTGAATGTCCGATTCCCGCTGCACGTGCTCGCGGTGGTGACCGGT
GTGAGCGGATCGGGAAAGAGTACCTTGGTGCGCGATCTTTTCTACGAAGGAGTAAAAAGGACTCTCGAAGGAGGCAGCAC
ACAAGGGTTAGCCTGCGAGGGCATCGTCGGGGACATCAAGTCTGTCCGAGACATTCAGTACGTGGATCAGAACAATTTCG
GTCGCAGCACCCGCTCCAACCCGGTCACGTACATAGGTGCTTACGATGATATTCGCAAGCTCTACAGTGCATTGCCACTG
TCCAAACAGATGGGATACCAGCCCTATTTCTTCAGTTTCAATAAGGAAGGAGGCCGCTGCGAGGTCTGCAAAGGAGAGGG
CAGTATCGTGGTGGAGATGCAGTTCATGGCCGATATAGTATTGGAGTGTGAAGAGTGTCATGGCAAACGTTTCCGCAAGG
AGATTCTCGATGTGGAGTACTGCGGCGCGAATATTTACGACTTGCTGGAGATGACGGTCAATCAGGCCGTTGAATTTTTC
ACCGATCATCCGAAAGCCGGCTACACGGACAAGATCGTGGAGAAGCTCGAATGTCTTCGAGAGGTCGGACTCGGGTATCT
CAAACTGGGACAGAGCAGCAGTACACTCTCCGGTGGGGAAAACCAACGCGTCAAGCTGGCTGCATATCTGGGACAAGCCA
AACCCGCACCCACGCTTTTTATCTTCGACGAACCGACTACGGGCTTACATATCCATGATATTCGTACCTTGCTGCACGCA
CTGAGTGCTCTTATCGACAAAGGGCATTCGGTAGTGGTGGTAGAGCACAATATGGAGATGATCAAGAGTGCCGACTGTAT
CATCGACTTAGGCCCTGAGGGTGGAGGTGCCGGTGGTTATTTGGTCGCAACAGGTACGCCCGAAGAGGTGATACGATACG
ATGCCTCCTATACGGGAAAGTGGTTGAAAGAGATATTGGGAAACGAACAAAGAGGTTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(305-368)

UvrA interaction domain (UvrA_inter)

(142-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

44.932

100

0.452
  uvrA Streptococcus pneumoniae TIGR4

44.932

100

0.452
  uvrA Streptococcus pneumoniae D39

44.932

100

0.452