Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   KDH82_RS08695 Genome accession   NZ_CP073350
Coordinates   2000001..2001386 (+) Length   461 a.a.
NCBI ID   WP_097555122.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain LyG-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1995001..2006386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDH82_RS08675 (KDH82_08680) - 1996599..1997897 (-) 1299 WP_211599848.1 DUF1343 domain-containing protein -
  KDH82_RS08680 (KDH82_08685) fsa 1997894..1998556 (-) 663 WP_004583877.1 fructose-6-phosphate aldolase -
  KDH82_RS10700 - 1998586..1998783 (-) 198 WP_249134664.1 DUF1661 domain-containing protein -
  KDH82_RS10705 - 1998752..1998901 (+) 150 WP_143740803.1 DUF1661 domain-containing protein -
  KDH82_RS08690 (KDH82_08695) - 1999029..1999955 (+) 927 WP_211599850.1 arginine deiminase family protein -
  KDH82_RS08695 (KDH82_08700) radA/sms 2000001..2001386 (+) 1386 WP_097555122.1 DNA repair protein RadA Machinery gene
  KDH82_RS08700 (KDH82_08705) - 2001448..2004141 (+) 2694 WP_211599851.1 transglutaminase-like domain-containing protein -
  KDH82_RS08705 (KDH82_08710) - 2004323..2004961 (+) 639 WP_097555124.1 MarC family protein -
  KDH82_RS08710 (KDH82_08715) - 2004965..2005456 (+) 492 WP_023847382.1 3'-5' exonuclease -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 51001.83 Da        Isoelectric Point: 6.9870

>NTDB_id=487226 KDH82_RS08695 WP_097555122.1 2000001..2001386(+) (radA/sms) [Porphyromonas gingivalis strain LyG-2]
MAKEKTIYVCRSCGTKYAKWQGNCNACGEWNCIDEEKVPAPASGKYAAKSFMPREQDNRPRLLQDVESGDEERIRLGDEE
FDRVLGGGIVKGAFVLLGGEPGIGKSTLILQTVLRLPQLRTLYVSGEESARQLKMRAERLGQAMNECYVYCETNIERILS
RAEELTPDLLVIDSIQTVYTEEMESSAGSVGQIRECAALLLKYCKTTGIPVIVIGHITKEGSIAGPKVLEHIVDTVLLFD
GDKHHLYRILRGQKNRYGSTSELGIYEMRQDGLRGVENPSEHLITRNREDLSGIAIAVAMEGIRPILIEAQALVSSAIYA
NPQRSATGFDIRRMNMLLAVLEKRAGFKLIQKDVFLNIAGGIKIADPATDLAVISAVLASSLDIVIPPAVCMTGEVGLSG
EIRPVSRIEQRITEARRIGFKEILVPADNFRQEDAGRFGIRLVPVRKVEEAFRHLFSKGRE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=487226 KDH82_RS08695 WP_097555122.1 2000001..2001386(+) (radA/sms) [Porphyromonas gingivalis strain LyG-2]
ATGGCTAAGGAGAAAACGATCTACGTCTGCCGTTCGTGCGGAACCAAATACGCCAAATGGCAAGGCAACTGCAATGCCTG
TGGAGAGTGGAACTGCATTGATGAGGAGAAGGTGCCGGCACCGGCATCGGGCAAGTATGCAGCCAAGAGCTTCATGCCTC
GGGAGCAGGACAACCGGCCAAGGCTCTTACAGGATGTGGAGTCCGGCGATGAAGAGCGTATTCGTCTCGGCGATGAAGAG
TTCGACCGCGTATTGGGTGGAGGAATTGTCAAAGGTGCATTTGTCCTGCTTGGCGGCGAGCCGGGAATCGGTAAGTCCAC
GCTTATCCTCCAGACGGTGCTGCGTCTGCCGCAGTTGCGCACGCTCTACGTGTCGGGTGAAGAAAGTGCCCGACAGCTGA
AGATGCGCGCCGAACGACTGGGGCAAGCCATGAATGAGTGCTACGTATACTGCGAAACGAATATAGAGAGGATACTCTCC
CGTGCAGAAGAACTCACACCCGATCTCCTCGTGATAGACTCTATACAGACGGTCTATACCGAGGAAATGGAAAGCTCGGC
CGGCAGCGTGGGGCAGATCCGCGAATGTGCCGCCTTACTGCTCAAATACTGCAAGACTACGGGTATCCCCGTCATCGTCA
TCGGGCACATCACCAAAGAAGGTAGCATAGCCGGACCGAAGGTGCTGGAGCATATAGTAGATACGGTGCTTCTCTTCGAC
GGGGATAAGCATCATCTCTACCGGATACTCCGAGGACAGAAGAACCGCTATGGCAGTACTTCCGAGCTGGGAATATACGA
GATGCGGCAGGACGGTCTGCGTGGCGTGGAGAATCCGAGTGAACACCTCATCACACGCAATAGGGAAGACCTCAGTGGCA
TAGCCATAGCCGTAGCGATGGAGGGCATTCGCCCGATACTCATCGAAGCACAGGCTTTGGTCAGCTCGGCCATTTATGCC
AATCCGCAGCGTTCGGCCACGGGCTTCGATATTCGGCGGATGAACATGCTCTTAGCCGTACTGGAGAAACGTGCCGGCTT
CAAGCTCATACAGAAGGATGTGTTTCTGAACATTGCCGGAGGTATCAAAATAGCCGATCCGGCTACGGATCTGGCCGTTA
TCTCGGCAGTGCTGGCGTCGAGTCTGGACATCGTTATCCCGCCGGCCGTATGCATGACGGGCGAGGTCGGACTCTCCGGA
GAGATACGTCCCGTGAGCCGCATCGAGCAGCGCATAACGGAAGCGCGCCGCATAGGGTTCAAAGAGATATTGGTGCCGGC
CGATAATTTCCGGCAGGAGGATGCCGGCCGCTTCGGTATTCGGCTCGTGCCGGTCAGAAAGGTGGAGGAAGCCTTCCGCC
ATCTGTTCTCAAAAGGAAGAGAATAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(343-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.352

98.698

0.477
  radA Streptococcus mitis NCTC 12261

46.507

99.349

0.462
  radA Streptococcus pneumoniae Rx1

46.507

99.349

0.462
  radA Streptococcus pneumoniae D39

46.507

99.349

0.462
  radA Streptococcus pneumoniae R6

46.507

99.349

0.462
  radA Streptococcus pneumoniae TIGR4

46.507

99.349

0.462
  radA Streptococcus mitis SK321

46.507

99.349

0.462