Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   KDH82_RS03250 Genome accession   NZ_CP073350
Coordinates   739113..739976 (+) Length   287 a.a.
NCBI ID   WP_004585131.1    Uniprot ID   A0A099WY42
Organism   Porphyromonas gingivalis strain LyG-2     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 734113..744976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDH82_RS03230 (KDH82_03230) guaA 734714..736234 (-) 1521 WP_077492189.1 glutamine-hydrolyzing GMP synthase -
  KDH82_RS03240 (KDH82_03240) - 736953..737210 (+) 258 WP_004585129.1 type B 50S ribosomal protein L31 -
  KDH82_RS03245 (KDH82_03245) - 737427..738923 (+) 1497 WP_211600188.1 DegQ family serine endoprotease -
  KDH82_RS03250 (KDH82_03250) rpoS 739113..739976 (+) 864 WP_004585131.1 RNA polymerase sigma factor RpoD/SigA Regulator
  KDH82_RS03255 (KDH82_03255) rpsF 740073..740426 (+) 354 WP_004585132.1 30S ribosomal protein S6 -
  KDH82_RS03260 (KDH82_03260) rpsR 740430..740702 (+) 273 WP_004585133.1 30S ribosomal protein S18 -
  KDH82_RS03265 (KDH82_03265) rplI 740727..741266 (+) 540 WP_004585134.1 50S ribosomal protein L9 -
  KDH82_RS03270 (KDH82_03270) - 741542..743497 (+) 1956 WP_004585135.1 LptF/LptG family permease -
  KDH82_RS03275 (KDH82_03275) - 743500..744717 (+) 1218 WP_004585136.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32602.30 Da        Isoelectric Point: 6.9850

>NTDB_id=487211 KDH82_RS03250 WP_004585131.1 739113..739976(+) (rpoS) [Porphyromonas gingivalis strain LyG-2]
MRQLKISKSITNRESASLDKYLQEIGREDLISVEEEVELAQAIKRGDRKALEKLTRANLRFVVSVAKQYQNQGLSLPDLI
NEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGTLNKIIKAQQKFEQENERRPSSAELAK
ELDIAEDKIADTMKVSGRHISVDAPFVEGEDNSLLDVLVNEDTPNTDKSLINESLAVEIERALSTLTEREAEIVKLFFGI
AGCQEMTLEEIGDKFGLTRERVRQIKEKAIRRLRQSNKCKNLKGYLG

Nucleotide


Download         Length: 864 bp        

>NTDB_id=487211 KDH82_RS03250 WP_004585131.1 739113..739976(+) (rpoS) [Porphyromonas gingivalis strain LyG-2]
ATGAGGCAACTTAAAATTTCCAAGTCGATCACGAATCGTGAAAGCGCGTCTCTGGACAAGTATCTGCAGGAGATCGGTCG
CGAGGACCTGATCTCGGTCGAAGAAGAAGTAGAGTTGGCGCAAGCCATTAAACGCGGTGATCGCAAAGCTCTTGAAAAGC
TGACTCGTGCGAATCTTCGTTTCGTAGTATCCGTAGCCAAACAATACCAGAATCAGGGTCTCAGTTTGCCGGACTTGATC
AATGAAGGAAACCTCGGATTGATCAAAGCGGCAGAGAAATTCGACGAAACGCGCGGTTTTAAGTTTATCTCGTATGCCGT
ATGGTGGATCCGCCAGTCCATCCTGCAAGCATTGGCCGAGCAGTCTCGTATCGTCCGCCTGCCACTGAATCAGGTGGGAA
CACTCAACAAGATCATCAAGGCCCAGCAGAAATTTGAGCAGGAGAATGAGCGTCGCCCCTCGTCAGCAGAGTTGGCTAAG
GAGCTGGACATTGCAGAAGACAAAATTGCCGATACGATGAAAGTATCCGGACGGCATATCTCTGTGGATGCTCCTTTCGT
GGAAGGTGAAGACAACAGCCTGCTGGATGTACTCGTCAATGAGGATACCCCCAATACGGACAAGTCGCTGATCAATGAAT
CGCTGGCCGTTGAGATAGAAAGAGCTTTGTCCACACTGACGGAGCGCGAAGCAGAGATCGTGAAGCTGTTCTTCGGCATT
GCCGGCTGTCAAGAGATGACACTGGAGGAAATCGGCGACAAATTCGGTCTCACCCGCGAACGCGTCCGCCAGATAAAAGA
GAAGGCTATTCGCCGTTTGCGACAGAGCAACAAGTGCAAGAATCTGAAAGGTTATCTCGGCTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(222-275)

Sigma-70 region 2 (Sigma70_r2)

(56-123)

Sigma-70 region 3 (Sigma70_r3)

(134-202)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(17-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099WY42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.176

88.85

0.366