Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KCI35_RS07770 Genome accession   NZ_CP073348
Coordinates   1838493..1839617 (+) Length   374 a.a.
NCBI ID   WP_211604697.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain GMU202011     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1833493..1844617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCI35_RS07760 - 1834067..1834561 (+) 495 WP_211605395.1 hypothetical protein -
  KCI35_RS07765 purL 1834796..1838500 (+) 3705 WP_211604696.1 phosphoribosylformylglycinamidine synthase -
  KCI35_RS07770 dprA 1838493..1839617 (+) 1125 WP_211604697.1 DNA-processing protein DprA Machinery gene
  KCI35_RS07775 - 1839633..1840529 (+) 897 WP_099896013.1 glycosyltransferase family 2 protein -
  KCI35_RS07780 - 1840581..1840862 (+) 282 WP_211604698.1 DUF1661 domain-containing protein -
  KCI35_RS07785 - 1841119..1841697 (+) 579 WP_005874170.1 putative peptidoglycan-binding domain-containing protein -
  KCI35_RS07790 - 1841835..1842428 (-) 594 WP_211604699.1 chromate transporter -
  KCI35_RS07795 - 1842447..1843037 (-) 591 WP_004584768.1 chromate transporter -
  KCI35_RS07800 gldN 1843198..1844277 (-) 1080 WP_211604700.1 gliding motility protein GldN -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40483.29 Da        Isoelectric Point: 5.4743

>NTDB_id=487162 KCI35_RS07770 WP_211604697.1 1838493..1839617(+) (dprA) [Porphyromonas gingivalis strain GMU202011]
MDDRRPQLTEEQLLFRIALTHVKGVGSVLARQLLSAMGSPEAIFSDRKELVQRLPKAPRRLLDAIFSPSVMEEAHRKLDQ
ALKAGLDMYFVTDDNYPYRLKECVDAPILLYSKGNVDLSPRRVLSIVGTRNITAYGRTATERIVSGLAETIPDLLIVSGL
AYGVDVAAHKAALDNGLPTVAVLAHGLDRIYPSGHRSIAMEMLRNGGLLTDYPMGTEPERFNFVGRNRIVAGLSDATLVI
ESAEKGGSLITAGLAFGYNREVLALPGRATDSRSAGCNALIRDQKAALVSSAQDVLTLLDWSSTIDAKPQTLNFRPDSWP
DTPVAECLLRAGTASVDELTRATGLPINDVSSQLFDLELDGLVQSQPGGIYSVI

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=487162 KCI35_RS07770 WP_211604697.1 1838493..1839617(+) (dprA) [Porphyromonas gingivalis strain GMU202011]
ATGGATGATCGTCGCCCCCAACTGACAGAGGAGCAACTGCTTTTCCGCATCGCACTCACGCATGTAAAAGGCGTGGGTAG
CGTGCTGGCAAGGCAGCTGCTTTCGGCTATGGGCAGTCCCGAAGCCATCTTTTCCGACAGGAAGGAGCTGGTACAGAGGC
TACCGAAAGCACCTCGCCGCTTGCTCGATGCCATCTTCTCTCCTTCGGTCATGGAGGAAGCACACCGAAAGTTGGATCAA
GCCCTCAAAGCCGGTCTGGATATGTATTTCGTCACCGATGATAACTATCCTTACCGCTTGAAAGAATGTGTCGATGCCCC
CATCCTTCTTTATTCCAAAGGCAATGTCGATCTCTCGCCACGTAGGGTGCTGAGCATTGTAGGTACGCGCAATATCACGG
CCTACGGACGTACAGCCACGGAGCGAATCGTATCGGGATTGGCTGAAACCATCCCCGATTTGCTTATCGTCAGCGGACTG
GCGTACGGCGTCGATGTCGCAGCTCATAAGGCCGCCTTGGATAATGGCTTGCCCACTGTAGCTGTATTGGCCCATGGATT
GGACAGGATTTATCCGAGCGGTCATCGTTCCATTGCTATGGAGATGCTCCGAAACGGAGGCTTGCTCACGGATTACCCTA
TGGGGACTGAACCGGAGCGATTCAATTTCGTCGGTCGCAATCGCATCGTAGCAGGCTTGTCGGATGCCACACTTGTGATC
GAATCGGCCGAAAAAGGAGGCTCCCTCATCACTGCCGGTCTGGCATTCGGCTACAATCGCGAAGTACTGGCTCTACCCGG
ACGAGCCACGGATAGCCGTTCGGCCGGCTGCAATGCCTTGATAAGGGATCAAAAAGCCGCGCTTGTCAGCTCGGCTCAAG
ATGTGCTGACGCTGCTCGATTGGAGTTCTACCATAGACGCCAAACCTCAGACATTGAATTTCCGTCCCGATAGTTGGCCG
GATACCCCCGTAGCCGAATGTCTTCTCAGAGCAGGCACAGCCTCGGTGGACGAGCTGACACGCGCTACCGGACTACCTAT
AAACGATGTTTCGTCTCAGCTTTTCGACCTCGAATTGGACGGACTGGTACAGTCTCAGCCCGGTGGCATATACTCCGTTA
TATAA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(328-369)

DNA recombination-mediator protein A (DNA_processg_A)

(83-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

37.027

98.93

0.366