Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   STND_RS06820 Genome accession   NC_017563
Coordinates   1297011..1297937 (-) Length   308 a.a.
NCBI ID   WP_002946409.1    Uniprot ID   -
Organism   Streptococcus thermophilus ND03     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1292011..1302937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STND_RS06790 (STND_1366) - 1292089..1292883 (-) 795 WP_011681412.1 HAD-IIB family hydrolase -
  STND_RS06795 (STND_1367) - 1293067..1293444 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  STND_RS06800 (STND_1368) - 1293449..1294147 (+) 699 WP_014608540.1 ABC transporter ATP-binding protein -
  STND_RS06805 (STND_1369) - 1294159..1294944 (+) 786 WP_002951425.1 hypothetical protein -
  STND_RS06810 (STND_1370) amiF 1294994..1295923 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  STND_RS06815 (STND_1371) amiE 1295916..1297001 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  STND_RS06820 (STND_1372) amiD 1297011..1297937 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  STND_RS06825 (STND_1373) amiC 1297937..1299430 (-) 1494 WP_014608541.1 ABC transporter permease Regulator
  STND_RS06830 (STND_1374) amiA 1299492..1301459 (-) 1968 WP_014608542.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34694.85 Da        Isoelectric Point: 9.7054

>NTDB_id=48715 STND_RS06820 WP_002946409.1 1297011..1297937(-) (amiD) [Streptococcus thermophilus ND03]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=48715 STND_RS06820 WP_002946409.1 1297011..1297937(-) (amiD) [Streptococcus thermophilus ND03]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

100

100

1
  amiD Streptococcus thermophilus LMD-9

100

100

1
  amiD Streptococcus salivarius strain HSISS4

96.429

100

0.964

Multiple sequence alignment