Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   KCI35_RS01785 Genome accession   NZ_CP073348
Coordinates   418660..419523 (+) Length   287 a.a.
NCBI ID   WP_004585131.1    Uniprot ID   A0A099WY42
Organism   Porphyromonas gingivalis strain GMU202011     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 413660..424523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCI35_RS01770 - 414541..415545 (-) 1005 WP_211604989.1 restriction endonuclease subunit M -
  KCI35_RS01775 - 416500..416757 (+) 258 WP_004585129.1 type B 50S ribosomal protein L31 -
  KCI35_RS01780 - 416974..418470 (+) 1497 WP_211604990.1 DegQ family serine endoprotease -
  KCI35_RS01785 rpoS 418660..419523 (+) 864 WP_004585131.1 RNA polymerase sigma factor RpoD/SigA Regulator
  KCI35_RS01790 rpsF 419620..419973 (+) 354 WP_004585132.1 30S ribosomal protein S6 -
  KCI35_RS01795 rpsR 419977..420249 (+) 273 WP_004585133.1 30S ribosomal protein S18 -
  KCI35_RS01800 rplI 420274..420813 (+) 540 WP_211604991.1 50S ribosomal protein L9 -
  KCI35_RS01805 - 421089..423044 (+) 1956 WP_130267229.1 LptF/LptG family permease -
  KCI35_RS01810 - 423047..424264 (+) 1218 WP_004585136.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32602.30 Da        Isoelectric Point: 6.9850

>NTDB_id=487145 KCI35_RS01785 WP_004585131.1 418660..419523(+) (rpoS) [Porphyromonas gingivalis strain GMU202011]
MRQLKISKSITNRESASLDKYLQEIGREDLISVEEEVELAQAIKRGDRKALEKLTRANLRFVVSVAKQYQNQGLSLPDLI
NEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGTLNKIIKAQQKFEQENERRPSSAELAK
ELDIAEDKIADTMKVSGRHISVDAPFVEGEDNSLLDVLVNEDTPNTDKSLINESLAVEIERALSTLTEREAEIVKLFFGI
AGCQEMTLEEIGDKFGLTRERVRQIKEKAIRRLRQSNKCKNLKGYLG

Nucleotide


Download         Length: 864 bp        

>NTDB_id=487145 KCI35_RS01785 WP_004585131.1 418660..419523(+) (rpoS) [Porphyromonas gingivalis strain GMU202011]
ATGAGGCAACTTAAAATTTCCAAGTCGATCACGAATCGTGAAAGCGCGTCTCTGGACAAGTATCTGCAGGAGATCGGTCG
CGAGGACCTGATCTCGGTCGAAGAAGAAGTAGAGTTGGCGCAAGCCATTAAACGCGGTGATCGCAAAGCTCTTGAAAAAC
TGACTCGTGCCAATCTTCGTTTCGTGGTATCCGTAGCCAAACAATACCAGAATCAGGGTCTCAGTTTGCCGGACTTGATC
AATGAAGGAAACCTCGGATTGATCAAAGCGGCAGAGAAATTCGACGAAACGCGCGGTTTTAAGTTTATCTCGTATGCCGT
ATGGTGGATCCGCCAGTCCATCCTGCAAGCATTGGCCGAGCAGTCTCGTATCGTCCGCCTGCCACTGAATCAGGTGGGAA
CACTCAACAAGATCATCAAGGCCCAGCAGAAATTCGAGCAGGAGAATGAGCGTCGCCCTTCGTCAGCAGAGTTGGCTAAG
GAGCTGGACATCGCAGAAGACAAAATTGCCGATACGATGAAAGTATCCGGACGGCATATCTCTGTGGATGCTCCTTTTGT
AGAAGGTGAAGACAACAGCCTGCTGGATGTACTCGTCAATGAGGATACCCCCAATACGGACAAGTCGCTGATCAATGAAT
CGCTGGCCGTTGAGATAGAAAGAGCTTTGTCCACACTGACGGAGCGCGAAGCAGAGATCGTGAAGCTGTTCTTCGGCATT
GCCGGCTGTCAAGAGATGACACTGGAGGAAATCGGCGACAAATTCGGTCTCACCCGCGAACGCGTCCGCCAGATAAAAGA
GAAGGCTATTCGCCGTTTGCGACAGAGCAACAAGTGCAAGAATCTGAAAGGTTATCTCGGCTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(222-275)

Sigma-70 region 2 (Sigma70_r2)

(56-123)

Sigma-70 region 3 (Sigma70_r3)

(134-202)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(17-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099WY42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.176

88.85

0.366