Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   KCI35_RS01350 Genome accession   NZ_CP073348
Coordinates   317410..318795 (-) Length   461 a.a.
NCBI ID   WP_077083210.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain GMU202011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 312410..323795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCI35_RS01335 - 313340..313831 (-) 492 WP_058018655.1 3'-5' exonuclease -
  KCI35_RS01340 - 313835..314473 (-) 639 WP_004583870.1 MarC family protein -
  KCI35_RS01345 - 314655..317348 (-) 2694 WP_211604958.1 transglutaminase-like domain-containing protein -
  KCI35_RS01350 radA/sms 317410..318795 (-) 1386 WP_077083210.1 DNA repair protein RadA Machinery gene
  KCI35_RS01355 - 318843..319769 (-) 927 WP_211604959.1 arginine deiminase family protein -
  KCI35_RS01360 - 319933..320046 (-) 114 WP_211604960.1 DUF1661 domain-containing protein -
  KCI35_RS01365 - 320015..320212 (+) 198 WP_143733590.1 DUF1661 domain-containing protein -
  KCI35_RS01370 fsa 320242..320904 (+) 663 WP_004583877.1 fructose-6-phosphate aldolase -
  KCI35_RS01375 - 320901..322199 (+) 1299 WP_211604961.1 DUF1343 domain-containing protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50947.74 Da        Isoelectric Point: 7.0456

>NTDB_id=487142 KCI35_RS01350 WP_077083210.1 317410..318795(-) (radA/sms) [Porphyromonas gingivalis strain GMU202011]
MAKEKTIYVCRSCGTKYAKWQGNCNACGEWNCIDEEKAPAPASGKHAAKSFMPREQDNRPRLLQDVESGDEERIRLGDEE
FDRVLGGGIVKGAFVLLGGEPGIGKSTLILQTVLRLPQLRTLYVSGEESARQLKMRAERLGQAMNECYVYCETNIERILS
RAEELTPDLLVIDSIQTVYTEEMESSAGSVGQIRECAALLLKYCKTTGIPVIVIGHITKEGSIAGPKVLEHIVDTVLLFD
GDKHHLYRILRGQKNRYGSTSELGIYEMRQDGLRGVENPSEHLITRNREDLSGIAIAVAMEGIRPILIEAQALVSSAIYA
NPQRSATGFDIRRMNMLLAVLEKRAGFKLIQKDVFLNIAGGIKIADPATDLAVISAVLASSLDIVIPPAVCMTGEVGLSG
EIRPVSRIEQRITEARRIGFKEILVPADNFRQEDAGRFGIRLVPVRKVEEAFRHLFSKGRE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=487142 KCI35_RS01350 WP_077083210.1 317410..318795(-) (radA/sms) [Porphyromonas gingivalis strain GMU202011]
ATGGCTAAGGAGAAAACGATCTACGTCTGTCGTTCGTGCGGAACCAAATACGCCAAATGGCAAGGCAACTGCAATGCCTG
TGGAGAGTGGAACTGCATTGATGAGGAGAAGGCGCCGGCACCGGCATCGGGCAAGCATGCAGCCAAGAGCTTCATGCCTC
GGGAGCAGGACAACCGGCCAAGACTCTTACAGGATGTGGAGTCCGGCGATGAAGAGCGTATTCGCCTCGGCGATGAAGAG
TTCGACCGCGTACTGGGTGGAGGAATTGTCAAAGGAGCATTTGTCCTGCTTGGCGGCGAGCCGGGAATCGGTAAGTCCAC
GCTTATCCTCCAGACGGTGCTGCGTCTGCCGCAGTTGCGCACGCTCTACGTGTCGGGTGAAGAAAGTGCCCGACAGCTGA
AGATGCGCGCCGAACGACTGGGGCAAGCCATGAATGAGTGCTACGTATACTGCGAAACGAATATAGAGAGGATACTCTCC
CGTGCAGAAGAACTCACACCCGATCTCCTCGTGATAGACTCTATACAGACGGTCTATACCGAGGAAATGGAAAGCTCGGC
CGGCAGCGTGGGGCAGATCCGCGAATGTGCCGCCTTACTGCTCAAATACTGCAAGACTACGGGTATCCCCGTCATCGTCA
TCGGACACATCACCAAAGAAGGTAGCATAGCCGGACCGAAGGTGCTGGAGCATATAGTAGATACGGTGCTTCTCTTCGAC
GGGGATAAGCATCATCTCTACCGGATACTCCGAGGACAGAAGAACCGCTATGGCAGTACTTCCGAGCTGGGGATATACGA
GATGCGGCAGGACGGTCTGCGTGGCGTGGAGAATCCGAGCGAACATCTCATCACACGCAATAGGGAAGACCTCAGTGGCA
TAGCCATAGCCGTAGCGATGGAGGGCATTCGCCCGATACTCATCGAAGCGCAGGCTTTGGTCAGCTCGGCCATTTATGCC
AATCCGCAGCGTTCGGCCACGGGCTTCGATATTCGGCGGATGAACATGCTCTTAGCCGTACTGGAGAAACGTGCCGGCTT
CAAGCTCATACAGAAGGATGTGTTTCTGAACATTGCCGGAGGTATCAAAATAGCCGATCCGGCTACGGATCTGGCCGTTA
TCTCGGCAGTGCTGGCGTCGAGTCTGGACATCGTTATCCCGCCGGCCGTATGCATGACAGGCGAGGTCGGACTCTCCGGA
GAGATACGTCCCGTGAGCCGCATCGAGCAGCGCATAACGGAAGCGCGCCGCATAGGCTTCAAAGAGATATTGGTACCGGC
CGATAATTTCCGGCAGGAGGATGCCGGCCGCTTCGGTATTCGGCTCGTGCCGGTCAGAAAGGTGGAGGAAGCCTTCCGCC
ATCTGTTCTCGAAAGGAAGAGAATAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(343-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.478

99.783

0.484
  radA Streptococcus mitis NCTC 12261

46.507

99.349

0.462
  radA Streptococcus pneumoniae Rx1

46.507

99.349

0.462
  radA Streptococcus pneumoniae D39

46.507

99.349

0.462
  radA Streptococcus pneumoniae R6

46.507

99.349

0.462
  radA Streptococcus pneumoniae TIGR4

46.507

99.349

0.462
  radA Streptococcus mitis SK321

46.507

99.349

0.462