Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D1J36_RS06265 Genome accession   NZ_CP073239
Coordinates   1357920..1359023 (+) Length   367 a.a.
NCBI ID   WP_154137653.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD0416     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1352920..1364023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J36_RS06245 (D1J36_006240) - 1353162..1356092 (-) 2931 WP_154137650.1 SusC/RagA family TonB-linked outer membrane protein -
  D1J36_RS06250 (D1J36_006245) - 1356449..1356922 (+) 474 WP_154137651.1 Lrp/AsnC family transcriptional regulator -
  D1J36_RS06255 (D1J36_006250) ruvC 1356975..1357529 (+) 555 WP_014938003.1 crossover junction endodeoxyribonuclease RuvC -
  D1J36_RS06260 (D1J36_006255) - 1357540..1357917 (+) 378 WP_154137652.1 group III truncated hemoglobin -
  D1J36_RS06265 (D1J36_006260) dprA 1357920..1359023 (+) 1104 WP_154137653.1 DNA-processing protein DprA Machinery gene
  D1J36_RS06270 (D1J36_006265) gdhA 1359207..1360565 (+) 1359 WP_049334426.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 40529.42 Da        Isoelectric Point: 6.3969

>NTDB_id=487125 D1J36_RS06265 WP_154137653.1 1357920..1359023(+) (dprA) [Riemerella anatipestifer strain RCAD0416]
MVNAEEVLYSIALRRSPLVGDVTFANLVGEVGSAKEVWSLPQSELRKISGIGKQIASNIGDESLLKFAEKEVEFCIKNEI
KINLRHLNQLPRLLGECYDAPAILFQKGDYEDTANNISIVGTRNATAYGKSFLEDLIVQFKDKNIQVISGLALGTDGIAH
QEALKNNIKTSAVLAHGLHIVYPSKHKILAEEILSNGGALFSEFCSDEKPDREHFLQRNRIVAGLSANTIVVESAYAGGS
ISTASFANQYNREVYALAGRLTDKYSQGCNHLIFQNKAKIISSIKGLLKDLDLDNTSKVLELFPSVEVSLTPIQKPIYDI
IKETNDISLDDLSEKLNQPISKVFPVLLELELLRLIRANSGRRYSIV

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=487125 D1J36_RS06265 WP_154137653.1 1357920..1359023(+) (dprA) [Riemerella anatipestifer strain RCAD0416]
ATGGTAAATGCAGAAGAAGTTTTATATTCCATTGCCCTTCGGCGAAGTCCTTTGGTGGGAGATGTTACATTTGCAAATTT
AGTGGGCGAAGTTGGTTCTGCTAAAGAGGTTTGGAGTTTGCCTCAGTCGGAACTAAGAAAAATATCAGGTATAGGTAAAC
AAATTGCCTCAAACATCGGAGATGAAAGTCTTTTAAAGTTTGCCGAAAAGGAAGTTGAGTTCTGCATTAAAAACGAAATA
AAAATCAATCTAAGACATCTTAATCAGCTTCCTCGTCTTTTAGGTGAATGTTATGATGCTCCAGCTATTCTTTTTCAAAA
AGGAGATTATGAGGATACCGCTAATAATATTAGTATTGTTGGGACGAGAAATGCCACTGCTTACGGTAAGTCGTTTTTGG
AGGATTTAATTGTTCAGTTTAAAGATAAAAATATTCAAGTCATTAGTGGTTTAGCTTTAGGTACAGACGGGATAGCTCAT
CAAGAGGCTTTAAAAAATAACATAAAAACTTCAGCAGTTTTAGCACATGGTTTACATATTGTTTATCCGTCTAAACATAA
AATTCTTGCTGAAGAAATATTAAGTAATGGAGGAGCTTTGTTCTCTGAATTCTGCTCTGATGAAAAACCAGATAGAGAAC
ATTTTTTGCAAAGGAATCGTATTGTAGCAGGGCTTTCGGCTAATACGATTGTGGTAGAGTCTGCTTATGCTGGCGGTTCT
ATTAGTACGGCGAGTTTTGCTAATCAGTATAATAGAGAAGTGTATGCTCTTGCGGGGCGTCTTACTGATAAGTATAGCCA
AGGCTGCAATCATCTTATTTTTCAAAATAAAGCTAAAATCATATCTTCTATTAAAGGTTTGCTAAAAGACCTAGATTTGG
ATAATACTTCTAAAGTTTTGGAGCTTTTTCCTTCGGTTGAGGTTTCTTTAACTCCTATTCAGAAGCCTATTTATGATATT
ATTAAAGAGACTAATGATATTTCTTTGGACGACTTGTCAGAAAAGTTAAATCAACCCATTTCTAAAGTATTTCCAGTTCT
GTTAGAATTAGAATTATTGAGGTTGATAAGAGCAAATTCTGGGAGGAGATATTCAATTGTTTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (WHD_DprA)

(309-361)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

93.733

100

0.937