Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   D1J36_RS06235 Genome accession   NZ_CP073239
Coordinates   1350958..1351542 (-) Length   194 a.a.
NCBI ID   WP_154137648.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD0416     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1345958..1356542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J36_RS06235 (D1J36_006230) ruvA 1350958..1351542 (-) 585 WP_154137648.1 Holliday junction branch migration protein RuvA Machinery gene
  D1J36_RS06240 (D1J36_006235) - 1351711..1353147 (-) 1437 WP_154137649.1 RagB/SusD family nutrient uptake outer membrane protein -
  D1J36_RS06245 (D1J36_006240) - 1353162..1356092 (-) 2931 WP_154137650.1 SusC/RagA family TonB-linked outer membrane protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21378.92 Da        Isoelectric Point: 6.4970

>NTDB_id=487124 D1J36_RS06235 WP_154137648.1 1350958..1351542(-) (ruvA) [Riemerella anatipestifer strain RCAD0416]
MIYSLRGIVQELSPTHLVIETGGIGYFVSVSVNTSKHFSIGKESLIYTQQIIREDAHLLYGFSELKEKEMFNLLISVNGV
GPASAMIMLSSLELREIAQAILSGNSAVLQKVKGIGTKTAQRIIIDLKDKVLHFGADESDISTVIDNKVKEESLSALEVL
GIPKKMSEKLADKILKQNPEIQTEDLVKQILKNI

Nucleotide


Download         Length: 585 bp        

>NTDB_id=487124 D1J36_RS06235 WP_154137648.1 1350958..1351542(-) (ruvA) [Riemerella anatipestifer strain RCAD0416]
ATGATTTATTCTCTACGAGGTATCGTTCAGGAGCTTAGCCCAACCCATTTAGTTATAGAAACTGGCGGCATAGGCTACTT
TGTAAGCGTTAGTGTAAACACTTCTAAACACTTCTCCATTGGGAAAGAATCTTTAATCTACACACAGCAAATCATTCGAG
AAGACGCTCACTTATTGTACGGCTTTTCGGAGCTAAAAGAGAAAGAAATGTTTAACCTACTTATTTCTGTAAATGGTGTA
GGACCAGCCTCTGCTATGATTATGCTTTCCTCACTAGAATTAAGAGAAATAGCACAAGCCATACTCTCTGGCAATAGTGC
TGTATTACAAAAAGTAAAGGGTATAGGCACTAAAACTGCACAACGAATTATCATTGATTTAAAGGATAAAGTACTACATT
TTGGAGCAGATGAATCTGATATTTCTACCGTTATTGATAATAAAGTGAAAGAAGAATCGTTATCTGCATTAGAAGTTTTA
GGAATCCCTAAAAAAATGTCAGAAAAATTAGCAGACAAAATTTTGAAACAAAATCCAGAAATTCAAACGGAAGATTTAGT
AAAACAAATTTTGAAAAATATTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(149-193)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.784

100

0.376