Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D1J36_RS02965 Genome accession   NZ_CP073239
Coordinates   651149..652498 (+) Length   449 a.a.
NCBI ID   WP_079206950.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD0416     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 646149..657498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J36_RS02955 (D1J36_002950) - 649321..650256 (+) 936 WP_154137815.1 nitronate monooxygenase -
  D1J36_RS02960 (D1J36_002955) - 650291..651055 (-) 765 WP_154137813.1 enoyl-CoA hydratase/isomerase family protein -
  D1J36_RS02965 (D1J36_002960) radA 651149..652498 (+) 1350 WP_079206950.1 DNA repair protein RadA Machinery gene
  D1J36_RS02970 (D1J36_002965) - 652545..654197 (+) 1653 WP_154137812.1 Ig-like domain-containing protein -
  D1J36_RS02975 (D1J36_002970) - 654197..654661 (+) 465 WP_154137811.1 heme-binding domain-containing protein -
  D1J36_RS02980 (D1J36_002975) - 654666..655511 (-) 846 WP_154137810.1 GLPGLI family protein -
  D1J36_RS02985 (D1J36_002980) - 655727..657157 (+) 1431 WP_154137809.1 redoxin domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49680.19 Da        Isoelectric Point: 7.4843

>NTDB_id=487111 D1J36_RS02965 WP_079206950.1 651149..652498(+) (radA) [Riemerella anatipestifer strain RCAD0416]
MAKLKTVYYCQNCGSQHSKWHGQCQNCGQWNTLVEEIAEKTTSKNYAGDFGRQHLINIIEVETQAEQRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRLTELQNPNCFLYTETSIEKILHEAKKL
QPDFMIVDSIQTLHSQVMESSPGTVSQIRECASEVIKFAKATNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTAEIGIYEMISAGLKEIKNPSEVLITKKSEEFSGNAVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRSGFQLGAKDVFLNITGGIKTDDPALDLAVVAAILSSNEDIAVSEHYCFAGEIGLSGEIRPV
PQIEKRISEAEKLGYHKIFVSKQNKIPKKKHNIKIVEVSKIEDFHEEIF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=487111 D1J36_RS02965 WP_079206950.1 651149..652498(+) (radA) [Riemerella anatipestifer strain RCAD0416]
GTGGCTAAATTAAAAACAGTATATTATTGTCAGAATTGTGGTTCACAACATTCCAAATGGCACGGACAATGCCAAAATTG
TGGACAATGGAACACTTTAGTGGAAGAGATTGCAGAAAAAACAACCTCTAAAAATTATGCAGGAGATTTTGGAAGACAAC
ACCTCATCAATATCATAGAAGTAGAAACACAAGCTGAGCAACGCATTAAAACTCCAAGCGAAGAACTTAACAGAGTTTTG
GGTGGTGGTATTGTTTTAGGTTCGGTAACTCTTATCGGAGGCGAACCAGGTATAGGGAAATCTACACTACTATTGCAATT
AGCCCTTAAAATGAAGAAAAAAATCCTCTATGTTTCTGGGGAAGAAAGTGCCTCTCAAATCAAAATGAGAGCAGATAGAC
TAACGGAACTCCAAAATCCGAATTGTTTTTTATACACTGAAACTTCAATAGAGAAAATCTTACACGAAGCCAAAAAACTT
CAGCCCGATTTTATGATTGTGGACTCTATACAAACCTTACATTCGCAGGTGATGGAGAGTTCCCCAGGCACAGTATCTCA
AATTAGAGAATGTGCTTCAGAAGTTATAAAGTTTGCAAAAGCGACCAACACGCCTGTTTTCTTAGTGGGACATATTACTA
AAGATGGACAAATAGCTGGACCAAAAGTATTGGAACATATGGTAGATGTAGTTCTTAATTTTGATGGTGATAGAAACCAT
TTGTTTAGACTTTTAAGAGCAAATAAAAATCGTTTTGGTTCTACTGCGGAGATTGGTATTTATGAGATGATTTCGGCGGG
ATTGAAAGAAATTAAAAATCCTTCGGAAGTGCTTATTACCAAAAAATCCGAAGAGTTTTCAGGTAATGCGGTGGCAGTAA
CGCTAGAAGGTAACCGCCCTATGTTGCTAGAAATACAAGCCCTCGTAAGTACAGCCGTGTATGGTACACCACAGAGAAGT
TCTACGGGTTTTGATGCTAAAAGGCTCAATATGCTTTTGGCAGTTTTGGAGAAACGCTCTGGCTTTCAACTTGGGGCTAA
AGATGTATTTTTAAATATTACTGGAGGTATTAAAACGGACGACCCCGCTCTAGATTTAGCTGTAGTTGCCGCTATCTTAT
CTTCCAACGAGGATATTGCAGTGTCGGAGCATTATTGTTTTGCAGGGGAAATTGGTCTTAGTGGAGAAATTCGTCCTGTG
CCACAAATAGAAAAACGCATCTCCGAAGCCGAAAAACTAGGCTATCATAAAATATTTGTTTCTAAACAAAATAAGATACC
AAAGAAAAAACACAATATAAAAATTGTGGAAGTTTCTAAAATAGAAGACTTTCACGAAGAGATATTTTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(336-424)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

47.473

100

0.481
  radA Streptococcus pneumoniae Rx1

47.368

100

0.481
  radA Streptococcus pneumoniae D39

47.368

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.368

100

0.481
  radA Streptococcus pneumoniae R6

47.368

100

0.481
  radA Streptococcus mitis SK321

47.241

100

0.477
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.611

96.214

0.468