Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   D1J36_RS01290 Genome accession   NZ_CP073239
Coordinates   274138..276903 (-) Length   921 a.a.
NCBI ID   WP_154137297.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD0416     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 269138..281903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J36_RS01270 (D1J36_001275) - 269582..270142 (+) 561 WP_154137133.1 RsmD family RNA methyltransferase -
  D1J36_RS01275 (D1J36_001280) kdsA 270289..271098 (+) 810 WP_154137134.1 3-deoxy-8-phosphooctulonate synthase -
  D1J36_RS01280 (D1J36_001285) - 271125..273302 (+) 2178 WP_154137135.1 TonB-dependent receptor plug domain-containing protein -
  D1J36_RS01285 (D1J36_001290) - 273331..273984 (+) 654 WP_154137136.1 permease-like cell division protein FtsX -
  D1J36_RS01290 (D1J36_001295) uvrA 274138..276903 (-) 2766 WP_154137297.1 excinuclease ABC subunit UvrA Machinery gene
  D1J36_RS01295 (D1J36_001300) eptA 276945..278468 (-) 1524 WP_154137137.1 phosphoethanolamine--lipid A transferase EptA -
  D1J36_RS01300 (D1J36_001305) - 278455..279282 (-) 828 WP_185147731.1 phosphatase PAP2 family protein -
  D1J36_RS01305 (D1J36_001310) - 279330..279950 (-) 621 WP_154137139.1 trimeric intracellular cation channel family protein -
  D1J36_RS01310 (D1J36_001315) coaD 279982..280440 (-) 459 WP_014937368.1 pantetheine-phosphate adenylyltransferase -
  D1J36_RS01315 (D1J36_001320) - 280447..281430 (-) 984 WP_154137140.1 D-alanine--D-alanine ligase -

Sequence

Protein


Download         Length: 921 a.a.        Molecular weight: 103357.34 Da        Isoelectric Point: 5.9748

>NTDB_id=487102 D1J36_RS01290 WP_154137297.1 274138..276903(-) (uvrA) [Riemerella anatipestifer strain RCAD0416]
MDIKNNIFVKNAHLNNLKNIDVLIPKNKLVVVTGVSGSGKSSLAFDTIYAEGQRRYVESLSSYARQFLGRLEKPKIDDIK
GLAPSIAIQQKVISSNPRSTVGTSTEIYDYLKLLFARVGRTYSPVSGDEVKKDSISDVISYIEENPNQEFLLTAPLSFAD
GDFKSLLNTLKVSGFTRLEINGNIAEIEDLESFGFVPEKEMSLNLVIDRFVYEDDEHFLQRLADSIQTAFYEGHGSCALK
NIETQKIKHFSNLFEADGISFLEPNLHFFSFNNPYGACPTCEGYGKVVGIDEDLVIPNKRLSVYEDAVACWKGETMSEWK
MHFIKNAPDFPIHKPYFELTKEQKQLLWRGTGAKNFPCIDQFFRMLEENLYKIQYRVMLSRYRGKTKCPDCEGLRLRKET
EWVKVGGHNIQSLMELPLDELLPLIKNLKLTKHEQEIAKRLLYEITTRLEFLLKVGLGYLTLNRTSNTLSGGESQRINLA
TSLGSSLVGSIYILDEPSIGLHSQDTENLIEVLKNLRDLGNTVIVVEHDEDIMRAADYIIDIGPEAGFLGGELVFAGDFK
DLKEADTLTSKYLTGRLEIAVPKRRRRAKSFINIKGARQNNLKNIDVDIPLENLVVVTGVSGSGKSTLMKEVLANDIQIQ
LGMGGKKGDYDYVEFPPQLVKHIELIDQNPIGKSSRSNPVTYLKAYDDIRDLFAKQRHSKTMNLKPKHFSFNVDGGRCDE
CKGEGVITISMQFMADVELECEHCKGARFKSEILEVKFDEKNIADILQMTVDEAIDFFSDNKQDKIVTKLRPLQEVGLGY
LKLGQSSSTLSGGEAQRVKLASFLVKGVTTEKTLFIFDEPSTGLHFHDIQKLLTSLQALIELGHSVVVIEHQPDIIKSAD
WIIDIGPNAGKYGGEVVFAGTPEDLAKDEKSKTAKFVAEKL

Nucleotide


Download         Length: 2766 bp        

>NTDB_id=487102 D1J36_RS01290 WP_154137297.1 274138..276903(-) (uvrA) [Riemerella anatipestifer strain RCAD0416]
ATGGATATTAAAAATAATATTTTCGTTAAAAACGCACATCTTAACAACCTTAAAAATATAGATGTTCTCATACCTAAAAA
CAAACTAGTGGTGGTAACTGGAGTGTCTGGTAGTGGGAAATCGTCTTTAGCCTTTGATACTATTTATGCCGAAGGGCAAA
GGCGTTATGTGGAGAGTTTAAGCTCTTATGCTAGGCAGTTTTTGGGGCGTTTAGAGAAACCAAAGATAGACGATATTAAA
GGCTTAGCACCATCTATCGCCATACAACAGAAAGTAATTTCTTCTAATCCAAGGTCCACAGTAGGAACTTCCACCGAAAT
TTACGATTATCTTAAATTATTGTTTGCTCGTGTGGGGCGTACCTATTCACCTGTATCTGGTGATGAGGTGAAAAAGGACA
GCATTTCTGATGTTATTTCTTATATAGAAGAAAATCCTAATCAAGAGTTTCTACTCACAGCGCCGCTTTCTTTTGCTGAT
GGTGATTTTAAATCACTATTAAATACATTGAAAGTTTCAGGATTTACTAGATTAGAAATTAACGGAAATATCGCTGAAAT
AGAAGATTTAGAGAGTTTTGGCTTCGTTCCTGAAAAAGAGATGTCGCTTAATTTGGTTATTGACCGCTTTGTTTACGAGG
ACGATGAGCATTTTCTGCAACGCTTAGCAGATTCTATCCAAACGGCGTTCTACGAGGGGCACGGCTCTTGTGCTTTAAAA
AATATCGAAACACAAAAAATAAAACACTTTTCTAACCTTTTTGAGGCTGATGGGATTTCGTTTTTAGAACCTAATCTCCA
CTTTTTCAGTTTTAATAATCCTTACGGAGCGTGTCCTACTTGCGAGGGTTATGGTAAAGTGGTTGGGATAGACGAAGACT
TGGTAATTCCTAATAAAAGGCTTTCGGTTTACGAAGATGCTGTCGCTTGTTGGAAAGGAGAAACGATGAGCGAGTGGAAA
ATGCACTTTATCAAAAACGCTCCAGATTTTCCAATCCATAAACCCTATTTTGAACTTACTAAAGAGCAAAAACAACTCTT
ATGGAGAGGAACGGGAGCTAAAAACTTTCCGTGTATAGACCAGTTTTTCCGTATGCTGGAGGAGAATTTGTATAAGATAC
AATACCGAGTGATGCTCTCTCGTTACAGAGGTAAAACCAAATGTCCCGACTGCGAAGGTCTAAGATTAAGAAAAGAAACC
GAATGGGTAAAAGTGGGAGGGCATAATATACAATCGTTAATGGAATTACCATTGGACGAACTTCTCCCTTTAATTAAGAA
CCTTAAACTTACCAAACACGAGCAAGAAATTGCTAAAAGGCTACTCTACGAAATTACTACTAGACTAGAGTTTTTGTTAA
AAGTAGGCTTGGGATATTTAACGCTAAACCGTACTTCTAATACTTTGTCAGGTGGAGAAAGTCAAAGGATTAACTTAGCG
ACTAGCTTGGGGAGTTCTTTGGTAGGGTCTATTTATATTTTGGACGAGCCTTCCATTGGGCTACATTCACAGGATACCGA
GAATTTAATAGAAGTTCTAAAGAATTTAAGAGATTTAGGCAATACCGTTATTGTTGTGGAACACGATGAGGATATTATGC
GTGCCGCAGATTATATTATAGATATAGGTCCAGAAGCAGGTTTTCTTGGGGGAGAGCTGGTCTTCGCAGGCGATTTTAAA
GACCTCAAAGAAGCTGATACTTTAACTTCTAAATATCTTACAGGAAGGCTAGAAATAGCAGTGCCAAAAAGGAGAAGGAG
AGCTAAATCGTTCATCAATATCAAAGGAGCAAGACAAAATAACCTTAAAAATATAGATGTTGATATTCCTTTGGAGAATT
TGGTGGTGGTTACGGGAGTGTCGGGTTCTGGTAAATCTACATTGATGAAAGAGGTTTTGGCTAACGATATTCAAATCCAG
TTAGGAATGGGAGGTAAAAAAGGCGACTATGATTATGTAGAATTTCCGCCTCAACTTGTGAAGCATATAGAATTGATAGA
CCAGAATCCTATCGGAAAATCGTCTAGGTCTAACCCGGTAACCTATCTTAAGGCTTATGATGATATTAGAGATTTGTTCG
CTAAGCAACGTCATTCTAAAACTATGAATTTAAAGCCTAAGCACTTTTCGTTCAATGTAGATGGTGGGAGATGTGATGAG
TGTAAAGGAGAGGGCGTTATTACCATATCTATGCAATTTATGGCAGATGTGGAACTAGAATGTGAGCATTGTAAAGGAGC
AAGATTTAAGTCCGAGATATTGGAAGTTAAATTTGATGAAAAAAACATTGCGGATATTCTACAAATGACGGTAGATGAAG
CGATTGATTTCTTTAGTGATAATAAACAAGATAAAATAGTTACGAAACTAAGACCATTGCAAGAGGTAGGACTAGGCTAT
CTTAAACTAGGGCAAAGCTCTTCTACGCTTTCGGGTGGGGAAGCTCAAAGGGTAAAGTTGGCTTCGTTTTTAGTAAAGGG
TGTAACTACGGAGAAAACACTTTTCATTTTTGATGAACCTTCCACAGGGCTTCATTTTCACGATATACAGAAGTTGTTAA
CCTCATTACAGGCACTTATAGAGTTGGGGCATTCTGTAGTGGTTATAGAGCATCAGCCAGATATTATTAAGTCGGCTGAT
TGGATAATAGATATAGGTCCTAACGCAGGTAAATATGGCGGAGAAGTGGTTTTTGCGGGAACGCCTGAAGATTTAGCAAA
AGATGAAAAATCCAAGACCGCTAAATTCGTAGCCGAAAAACTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(602-841)

UvrA DNA-binding domain (UvrA_DNA-bind)

(291-356)

UvrA interaction domain (UvrA_inter)

(135-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

44.305

100

0.46
  uvrA Streptococcus pneumoniae TIGR4

44.305

100

0.46
  uvrA Streptococcus pneumoniae D39

44.305

100

0.46