Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   KCG55_RS10170 Genome accession   NZ_CP073117
Coordinates   2136321..2136926 (-) Length   201 a.a.
NCBI ID   WP_003679078.1    Uniprot ID   C0EK12
Organism   Neisseria subflava strain HP0015     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2131321..2141926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS10150 (KCG55_10225) recD 2131933..2133696 (-) 1764 WP_254322961.1 exodeoxyribonuclease V subunit alpha Machinery gene
  KCG55_RS10155 (KCG55_10230) lolD 2133830..2134513 (-) 684 WP_254322962.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KCG55_RS10160 (KCG55_10235) - 2134506..2135756 (-) 1251 WP_150537405.1 lipoprotein-releasing ABC transporter permease subunit -
  KCG55_RS10165 (KCG55_10240) - 2135971..2136258 (+) 288 WP_003683377.1 hypothetical protein -
  KCG55_RS10170 (KCG55_10245) recR 2136321..2136926 (-) 606 WP_003679078.1 recombination mediator RecR Machinery gene
  KCG55_RS10175 (KCG55_10250) - 2137009..2138862 (-) 1854 WP_254322963.1 SurA N-terminal domain-containing protein -
  KCG55_RS10180 (KCG55_10255) - 2139008..2139355 (-) 348 WP_250579753.1 ArsC family reductase -
  KCG55_RS10185 (KCG55_10260) rnr 2139437..2141917 (-) 2481 WP_254322964.1 ribonuclease R -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22333.76 Da        Isoelectric Point: 5.0772

>NTDB_id=487016 KCG55_RS10170 WP_003679078.1 2136321..2136926(-) (recR) [Neisseria subflava strain HP0015]
MSKNPDAFVRLINALKILPNVGPKSAQRMAYQLLQYKREEAQELVDALQFALRQVQHCRMCNTFCEGDLCEICADEKREK
SRLMIVHMPADVSSMEAANCHDGLYFVLMGQVSPAQGMDISAVALDKLVARLQASDIEEIIIATNFTAEGDATAYVLAEL
FKNLPYKVSRLARGIPLGGEMEYVDAGTLAQAVYDRRNIQS

Nucleotide


Download         Length: 606 bp        

>NTDB_id=487016 KCG55_RS10170 WP_003679078.1 2136321..2136926(-) (recR) [Neisseria subflava strain HP0015]
ATGAGTAAAAATCCTGATGCCTTTGTCCGCTTGATTAATGCATTAAAAATCCTGCCCAATGTCGGCCCGAAATCCGCCCA
GCGCATGGCTTATCAGCTTTTACAGTACAAACGTGAAGAAGCTCAGGAGTTGGTGGATGCTTTGCAATTTGCCTTGAGAC
AGGTGCAGCATTGTCGGATGTGCAACACATTTTGCGAAGGCGATTTGTGTGAAATTTGTGCGGATGAAAAACGTGAGAAA
AGCCGCTTGATGATTGTACATATGCCGGCGGATGTCTCCAGTATGGAGGCGGCTAATTGTCATGATGGTCTGTATTTTGT
TTTGATGGGGCAAGTCAGTCCGGCGCAGGGTATGGATATTTCGGCAGTGGCATTAGATAAGCTGGTTGCCCGTTTGCAGG
CGAGTGATATTGAGGAAATTATCATTGCAACCAACTTCACAGCCGAAGGCGATGCGACAGCGTATGTATTGGCAGAATTA
TTTAAAAACCTTCCTTATAAAGTCAGCCGATTGGCGAGGGGAATCCCTTTGGGTGGCGAGATGGAATATGTGGATGCCGG
TACTTTGGCTCAAGCAGTTTACGATAGAAGAAATATCCAATCTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0EK12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.071

98.01

0.373
  recR Bacillus subtilis subsp. subtilis str. 168

37.436

97.015

0.363