Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IG283_RS09035 Genome accession   NZ_CP062220
Coordinates   1892739..1893344 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Kottbus strain Kharkiv     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1887739..1898344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG283_RS09015 (IG283_09015) - 1888134..1889894 (-) 1761 WP_000156448.1 AAA family ATPase -
  IG283_RS09020 (IG283_09020) matP 1890080..1890532 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  IG283_RS09025 (IG283_09025) ompA 1890604..1891656 (-) 1053 WP_001670727.1 porin OmpA -
  IG283_RS09030 (IG283_09030) sulA 1892013..1892522 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  IG283_RS09035 (IG283_09035) sxy/tfoX 1892739..1893344 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  IG283_RS09040 (IG283_09040) yccS 1893331..1895484 (-) 2154 WP_000950876.1 YccS family putative transporter -
  IG283_RS09045 (IG283_09045) - 1895503..1895948 (-) 446 Protein_1763 YccF domain-containing protein -
  IG283_RS09050 (IG283_09050) helD 1896072..1898126 (+) 2055 WP_001748328.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=486952 IG283_RS09035 WP_001202375.1 1892739..1893344(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Kottbus strain Kharkiv]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=486952 IG283_RS09035 WP_001202375.1 1892739..1893344(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Kottbus strain Kharkiv]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751