Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   STND_RS02300 Genome accession   NC_017563
Coordinates   418424..418867 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus ND03     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 413424..423867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STND_RS02280 (STND_0423) - 413946..414698 (-) 753 WP_011680801.1 NUDIX domain-containing protein -
  STND_RS02285 (STND_0424) - 414762..415868 (-) 1107 WP_014608024.1 AAA family ATPase -
  STND_RS02290 (STND_0425) gdhA 416212..417564 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STND_RS02295 (STND_0426) - 417823..418233 (+) 411 WP_011680804.1 peptide deformylase -
  STND_RS02300 (STND_0427) rcrR 418424..418867 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  STND_RS02305 (STND_0428) rcrP 418871..420685 (+) 1815 WP_014608025.1 ABC transporter ATP-binding protein Regulator
  STND_RS02310 (STND_0429) rcrQ 420675..422453 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  STND_RS02315 (STND_0430) - 422609..422980 (+) 372 WP_224103327.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=48695 STND_RS02300 WP_002945408.1 418424..418867(+) (rcrR) [Streptococcus thermophilus ND03]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=48695 STND_RS02300 WP_002945408.1 418424..418867(+) (rcrR) [Streptococcus thermophilus ND03]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment