Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   KCG56_RS03455 Genome accession   NZ_CP073116
Coordinates   704522..705127 (+) Length   201 a.a.
NCBI ID   WP_003679078.1    Uniprot ID   C0EK12
Organism   Neisseria subflava strain TT0073     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 699522..710127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS03440 (KCG56_03455) rnr 699530..702010 (+) 2481 WP_254321915.1 ribonuclease R -
  KCG56_RS03445 (KCG56_03460) - 702093..702440 (+) 348 WP_254321916.1 ArsC family reductase -
  KCG56_RS03450 (KCG56_03465) - 702586..704439 (+) 1854 WP_254321917.1 SurA N-terminal domain-containing protein -
  KCG56_RS03455 (KCG56_03470) recR 704522..705127 (+) 606 WP_003679078.1 recombination mediator RecR Machinery gene
  KCG56_RS03460 (KCG56_03475) - 705190..705477 (-) 288 WP_003683377.1 hypothetical protein -
  KCG56_RS03465 (KCG56_03480) - 705692..706941 (+) 1250 Protein_669 lipoprotein-releasing ABC transporter permease subunit -
  KCG56_RS03470 (KCG56_03485) lolD 706934..707617 (+) 684 WP_254321918.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KCG56_RS03475 (KCG56_03490) recD 707750..709513 (+) 1764 WP_254321919.1 exodeoxyribonuclease V subunit alpha Machinery gene

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22333.76 Da        Isoelectric Point: 5.0772

>NTDB_id=486916 KCG56_RS03455 WP_003679078.1 704522..705127(+) (recR) [Neisseria subflava strain TT0073]
MSKNPDAFVRLINALKILPNVGPKSAQRMAYQLLQYKREEAQELVDALQFALRQVQHCRMCNTFCEGDLCEICADEKREK
SRLMIVHMPADVSSMEAANCHDGLYFVLMGQVSPAQGMDISAVALDKLVARLQASDIEEIIIATNFTAEGDATAYVLAEL
FKNLPYKVSRLARGIPLGGEMEYVDAGTLAQAVYDRRNIQS

Nucleotide


Download         Length: 606 bp        

>NTDB_id=486916 KCG56_RS03455 WP_003679078.1 704522..705127(+) (recR) [Neisseria subflava strain TT0073]
ATGAGTAAAAATCCTGATGCCTTTGTCCGCTTGATTAATGCATTAAAAATCCTGCCCAATGTCGGCCCAAAATCCGCACA
ACGCATGGCTTACCAGCTTTTACAGTACAAACGCGAAGAAGCGCAGGAATTGGTGGATGCTTTGCAATTTGCCTTGAGAC
AGGTGCAGCATTGTCGGATGTGCAACACATTTTGCGAGGGCGATTTGTGTGAAATTTGTGCGGACGAAAAACGTGAGAAA
AGCCGCTTGATGATTGTGCATATGCCGGCGGATGTCTCCAGTATGGAGGCGGCCAATTGCCATGATGGCCTGTATTTTGT
TTTGATGGGGCAAGTCAGTCCGGCGCAGGGCATGGATATTTCGGCAGTAGCATTAGATAAGCTGGTTGCCCGTTTGCAGG
CGAGTGATATTGAGGAAATCATCATTGCAACCAACTTCACAGCCGAAGGCGACGCGACAGCGTATGTATTGGCGGAATTG
TTTAAAAATCTTCCTTATAAAGTCAGCCGATTGGCAAGGGGAATCCCTTTGGGCGGCGAGATGGAATATGTGGATGCCGG
TACTTTGGCTCAGGCTGTTTACGATAGAAGAAATATCCAATCTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0EK12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.071

98.01

0.373
  recR Bacillus subtilis subsp. subtilis str. 168

37.436

97.015

0.363