Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   KCG54_RS08045 Genome accession   NZ_CP073115
Coordinates   1661192..1661653 (+) Length   153 a.a.
NCBI ID   WP_049329865.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0077     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1656192..1666653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS08020 (KCG54_08070) - 1656291..1656959 (-) 669 WP_070584289.1 DUF3108 domain-containing protein -
  KCG54_RS08025 (KCG54_08075) purN 1656990..1657616 (-) 627 WP_254325007.1 phosphoribosylglycinamide formyltransferase -
  KCG54_RS08030 (KCG54_08080) - 1657713..1658531 (-) 819 WP_254323884.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  KCG54_RS08035 (KCG54_08085) - 1658692..1659956 (-) 1265 Protein_1567 Glu/Leu/Phe/Val dehydrogenase -
  KCG54_RS08040 (KCG54_08090) - 1660378..1661091 (+) 714 WP_254323885.1 phosphoglycolate phosphatase -
  KCG54_RS08045 (KCG54_08095) recX 1661192..1661653 (+) 462 WP_049329865.1 recombination regulator RecX Regulator
  KCG54_RS08050 (KCG54_08100) - 1661729..1661890 (+) 162 WP_049344044.1 hypothetical protein -
  KCG54_RS08055 (KCG54_08105) - 1662138..1663145 (-) 1008 WP_254323886.1 IS5 family transposase -
  KCG54_RS08060 (KCG54_08110) - 1663229..1665385 (-) 2157 WP_049335451.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  KCG54_RS08065 (KCG54_08115) rpoZ 1665492..1665698 (-) 207 WP_003682294.1 DNA-directed RNA polymerase subunit omega -
  KCG54_RS08070 (KCG54_08120) gmk 1665752..1666369 (-) 618 WP_003686079.1 guanylate kinase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17905.10 Da        Isoelectric Point: 7.1699

>NTDB_id=486871 KCG54_RS08045 WP_049329865.1 1661192..1661653(+) (recX) [Neisseria subflava strain TT0077]
MKPPKTLRARALDILSRQEVSRVGLKRKLAPHAESEEELEKVLDEFAERNWQSDQRYAEAYIHSKSNRYGTLRLKQALAQ
QGIDADDCREFLPDREDELQTAISVLRKKFKQEAQDLKEKQKQARFLAYRGFGADTIQTALKTAWNEDEDFYQ

Nucleotide


Download         Length: 462 bp        

>NTDB_id=486871 KCG54_RS08045 WP_049329865.1 1661192..1661653(+) (recX) [Neisseria subflava strain TT0077]
ATGAAACCTCCCAAAACCTTACGCGCCCGCGCCTTGGATATTCTTTCTCGTCAGGAAGTCAGCCGTGTCGGCTTGAAACG
CAAACTGGCTCCGCACGCTGAAAGCGAAGAAGAATTGGAAAAGGTTTTGGACGAATTCGCCGAACGAAATTGGCAATCCG
ACCAACGTTACGCAGAAGCCTATATTCACAGCAAAAGCAACCGTTACGGCACGCTCCGCCTCAAGCAAGCCTTGGCGCAA
CAAGGCATCGATGCAGACGACTGTCGGGAGTTCCTACCCGACAGGGAGGACGAGCTGCAAACCGCTATTTCCGTCTTGCG
TAAAAAATTCAAGCAAGAAGCTCAAGATTTGAAAGAAAAACAAAAACAAGCACGTTTCCTTGCTTATCGCGGCTTTGGTG
CCGACACCATTCAGACGGCCTTAAAAACGGCGTGGAATGAAGACGAAGACTTCTATCAATAA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(30-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

78.378

96.732

0.758