Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   TL13_RS09215 Genome accession   NC_021213
Coordinates   1869444..1869893 (-) Length   149 a.a.
NCBI ID   WP_015647494.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1864444..1874893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS09200 (TL13_1841) - 1865077..1865871 (+) 795 WP_015647491.1 formate/nitrite transporter family protein -
  TL13_RS09205 (TL13_1842) - 1865960..1867744 (-) 1785 WP_015647492.1 ABC transporter ATP-binding protein -
  TL13_RS09210 (TL13_1843) - 1867745..1869451 (-) 1707 WP_015647493.1 ABC transporter ATP-binding protein -
  TL13_RS09215 (TL13_1844) rcrR 1869444..1869893 (-) 450 WP_015647494.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  TL13_RS09220 (TL13_1845) - 1870115..1871131 (+) 1017 WP_015647495.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  TL13_RS09225 (TL13_1846) galU 1871177..1872076 (+) 900 WP_015647496.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  TL13_RS09230 (TL13_1847) - 1872094..1872771 (-) 678 WP_015647497.1 rhomboid family intramembrane serine protease -
  TL13_RS09235 (TL13_1848) - 1872755..1873297 (-) 543 WP_015647498.1 5-formyltetrahydrofolate cyclo-ligase -
  TL13_RS09240 (TL13_1849) - 1873339..1874466 (-) 1128 WP_015647499.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17577.16 Da        Isoelectric Point: 8.8975

>NTDB_id=48679 TL13_RS09215 WP_015647494.1 1869444..1869893(-) (rcrR) [Streptococcus suis TL13]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSDLETFVKDIEAELKISKSVASNLVKRMEKNDFIQ
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLIRQVANQLKVNIQRYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=48679 TL13_RS09215 WP_015647494.1 1869444..1869893(-) (rcrR) [Streptococcus suis TL13]
ATGGGACATACTATTGCAGATTTTCGGAATCTATTAAATCAGATTGAACAAATTAGTGAAACGATTGCCAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGGTGGGCTTTGCGTTTCATAGCAGAACGGTCAGACCTTGAAACCTTTGTCAAAG
ATATTGAAGCGGAGTTGAAAATTTCCAAATCCGTTGCCAGCAATCTGGTTAAGCGAATGGAGAAAAATGACTTTATTCAG
GTTTTGCCATCTCAGTTTGATAGACGTTACAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTTTTTAGAGGTATTCAAAAGGAAGAATTTGATTTGATCAGACAGGTGGCCA
ATCAATTAAAAGTAAATATTCAACGCTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.662

95.302

0.416