Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   KCG52_RS01025 Genome accession   NZ_CP073114
Coordinates   222285..222890 (-) Length   201 a.a.
NCBI ID   WP_049348472.1    Uniprot ID   A0ACD1EQR8
Organism   Neisseria subflava strain HP0048     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 217285..227890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS01005 (KCG52_00985) recD 217898..219661 (-) 1764 WP_254344520.1 exodeoxyribonuclease V subunit alpha Machinery gene
  KCG52_RS01010 (KCG52_00990) lolD 219794..220477 (-) 684 WP_003679081.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KCG52_RS01015 (KCG52_00995) - 220470..221720 (-) 1251 WP_254344522.1 lipoprotein-releasing ABC transporter permease subunit -
  KCG52_RS01020 (KCG52_01000) - 221935..222222 (+) 288 WP_254344529.1 hypothetical protein -
  KCG52_RS01025 (KCG52_01005) recR 222285..222890 (-) 606 WP_049348472.1 recombination mediator RecR Machinery gene
  KCG52_RS01030 (KCG52_01010) - 222973..224826 (-) 1854 WP_254344531.1 SurA N-terminal domain-containing protein -
  KCG52_RS01035 (KCG52_01015) - 224972..225319 (-) 348 WP_254344532.1 ArsC family reductase -
  KCG52_RS01040 (KCG52_01020) rnr 225401..227881 (-) 2481 WP_254345440.1 ribonuclease R -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22347.79 Da        Isoelectric Point: 5.0701

>NTDB_id=486759 KCG52_RS01025 WP_049348472.1 222285..222890(-) (recR) [Neisseria subflava strain HP0048]
MSKNPDAFVRLINALKILPNVGPKSAQRMAYQLLQYKREEAQELVDALQFALRQVQHCRMCNTFCEGDLCEICADEKRDK
SRLMIVHMPADVSSMEAANCHDGLYFVLMGQVSPAQGMDISAVALDKLVVRLQASDIEEIIIATNFTAEGDATAYVLAEL
FKNLPYKVSRLARGIPLGGEMEYVDAGTLAQAVYDRRNIQS

Nucleotide


Download         Length: 606 bp        

>NTDB_id=486759 KCG52_RS01025 WP_049348472.1 222285..222890(-) (recR) [Neisseria subflava strain HP0048]
ATGAGTAAAAATCCTGATGCCTTTGTCCGCTTGATTAATGCATTAAAAATCCTGCCCAATGTCGGCCCGAAATCCGCACA
ACGTATGGCCTACCAGCTTTTACAGTATAAACGCGAAGAAGCGCAGGAGTTGGTGGACGCTTTGCAGTTTGCTTTGAGGC
AGGTGCAGCATTGTCGGATGTGCAACACATTTTGCGAAGGCGATTTGTGTGAAATTTGCGCAGACGAAAAACGCGATAAA
AGTCGTTTGATGATTGTGCATATGCCGGCGGATGTCTCCAGCATGGAGGCGGCCAATTGCCATGATGGCCTGTATTTTGT
TTTGATGGGGCAAGTCAGCCCGGCGCAGGGCATGGATATTTCGGCAGTCGCATTAGATAAGCTGGTGGTCCGTTTACAGG
CGAGTGATATTGAGGAAATTATCATTGCAACCAACTTCACAGCAGAAGGTGATGCGACAGCGTATGTATTGGCGGAATTG
TTTAAAAATCTTCCTTATAAAGTCAGCCGGTTGGCAAGGGGAATCCCTTTGGGCGGCGAGATGGAATATGTGGATGCCGG
TACTTTGGCTCAAGCCGTTTACGATAGAAGAAACATCCAATCTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(40-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.579

98.01

0.378
  recR Bacillus subtilis subsp. subtilis str. 168

37.949

97.015

0.368