Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   KCG37_RS26605 Genome accession   NZ_CP073082
Coordinates   5778898..5779422 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain WTJH17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5773898..5784422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG37_RS26590 (KCG37_26590) aroB 5775014..5776120 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  KCG37_RS26595 (KCG37_26595) aroK 5776170..5776688 (-) 519 WP_003095833.1 shikimate kinase AroK -
  KCG37_RS26600 (KCG37_26600) pilQ 5776700..5778844 (-) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  KCG37_RS26605 (KCG37_26605) comL/pilP 5778898..5779422 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  KCG37_RS26610 (KCG37_26610) pilO 5779419..5780042 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  KCG37_RS26615 (KCG37_26615) pilN 5780039..5780635 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  KCG37_RS26620 (KCG37_26620) pilM 5780635..5781699 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  KCG37_RS26625 (KCG37_26625) - 5781884..5784355 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=486730 KCG37_RS26605 WP_003095836.1 5778898..5779422(-) (comL/pilP) [Pseudomonas aeruginosa strain WTJH17]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=486730 KCG37_RS26605 WP_003095836.1 5778898..5779422(-) (comL/pilP) [Pseudomonas aeruginosa strain WTJH17]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362