Detailed information NTG0486718

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: JNUCC31_RS11135
• Genome accession: NZ_CP062165
• Coordinates: 2529747..2531114 (-)
• Length: 455 a.a.
• NCBI ID: WP_192271111.1
• Uniprot ID: A0A7M2AE29
• Organism: Paenibacillus sp. JNUCC-31
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	2531433..2531906	2529747..2531114	flank	319

Gene organization within MGE regions

Location: 2529747..2531906

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JNUCC31_RS11135 (JNUCC31_11135)	radA	2529747..2531114 (-)	1368	WP_192271111.1	DNA repair protein RadA	Machinery gene
JNUCC31_RS11140 (JNUCC31_11140)	tnpA	2531433..2531906 (-)	474	WP_138227108.1	IS200/IS605 family transposase	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49681.26 Da
• Isoelectric Point: 6.7190

>NTDB_id=486718 JNUCC31_RS11135 WP_192271111.1 2529747..2531114(-) (radA) [Paenibacillus sp. JNUCC-31]
MAKVKTKFQCTECGYEAPKWYGKCPGCQSWNSMVEETETVVKTQGRNSPLFESKDKPLPIIDIDSGQEPRVQTGIEELNR
VLGGGIVPGSLVLVGGDPGIGKSTLMLQTSHALTHSGLRVLYVSGEESVKQTKLRADRLGALSPELYVLCETNMERVEEA
VDQIQPHFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEEGLREVGNPSELFLSERPLGVAGSTVVASMEGTRPLLVELQALISSTHFPS
PRRMATGIDHHRLNLIIAVLEKRMGMFLQTQDAYLNVAGGVRLDEPAIDLAVAVSIASSLRDVPTKPDDVIFGEIGLTGE
VRAVSRAEQRVKEAEKLGFKRVILPEKSLKGWKHPRGIQLIGVNTVADALAVALD

Nucleotide

• Length: 1368 bp

>NTDB_id=486718 JNUCC31_RS11135 WP_192271111.1 2529747..2531114(-) (radA) [Paenibacillus sp. JNUCC-31]
GTGGCCAAAGTTAAAACCAAGTTTCAGTGTACGGAATGCGGCTATGAAGCCCCCAAATGGTACGGCAAATGTCCAGGTTG
TCAGTCTTGGAATTCAATGGTGGAAGAAACCGAAACGGTGGTCAAAACACAAGGGAGAAATTCCCCACTCTTTGAGAGTA
AAGATAAACCACTTCCCATCATAGATATAGATAGCGGTCAGGAGCCGCGTGTACAGACTGGAATTGAAGAGCTGAACCGT
GTACTGGGCGGCGGAATTGTTCCAGGATCTCTCGTTCTGGTGGGCGGAGACCCCGGAATCGGAAAATCAACGTTGATGTT
GCAAACATCTCATGCATTAACTCATTCGGGTTTGCGCGTGTTATATGTCTCTGGCGAGGAATCAGTCAAGCAAACCAAAT
TGCGGGCTGACCGTCTGGGTGCATTATCTCCTGAGTTATATGTACTATGTGAGACTAATATGGAACGAGTTGAGGAAGCG
GTGGATCAGATCCAGCCGCATTTTCTTGTCATCGACTCCATTCAGACGGTATATCTGCCAGAAGTCACCAGTGCACCCGG
CAGTGTAGCTCAGGTAAGGGAATGTACCTCACGGTTTATGCGGATTGCAAAAGGGCGAGGCATTGCAACCGTACTTGTGG
GGCATGTTACGAAAGAAGGCGCCATTGCCGGTCCGCGTATGCTCGAACATATGGTGGACTGTGTTCTTTATTTTGAAGGA
GAACGGCATCATACGTATCGCCTGTTGCGTGCGGTTAAGAACCGTTTTGGTTCGACCAATGAGATAGGCATCTTTGAAAT
GGGGGAGGAAGGACTTCGTGAAGTAGGTAACCCTTCTGAGCTCTTTTTGTCAGAACGTCCACTTGGTGTGGCGGGTTCTA
CCGTAGTTGCCAGTATGGAGGGGACGCGTCCACTGCTTGTGGAATTGCAGGCGCTTATCTCTTCTACTCATTTTCCTTCT
CCGCGTCGTATGGCAACAGGCATAGACCATCACAGGCTAAACCTCATTATTGCTGTACTTGAGAAACGAATGGGCATGTT
CTTGCAAACGCAGGATGCGTATCTGAATGTGGCTGGAGGTGTACGGCTGGATGAGCCGGCTATCGATTTGGCGGTTGCTG
TCAGCATCGCCTCCAGTCTGAGGGATGTACCGACCAAGCCGGATGACGTCATTTTTGGGGAAATCGGTTTGACGGGTGAG
GTTCGGGCCGTATCACGGGCTGAACAACGTGTGAAAGAAGCCGAGAAACTGGGCTTCAAGCGTGTCATTTTACCAGAAAA
AAGCTTAAAGGGCTGGAAACATCCTCGCGGGATACAACTGATCGGTGTGAATACCGTGGCAGATGCACTAGCGGTTGCTT
TAGATTAG

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (71-220)

• Subunit ChlI of Mg-chelatase (ChlI) (348-427)

3D structure

• AlphaFold DB: A0A7M2AE29

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	65.939	100	0.664
radA	Streptococcus pneumoniae Rx1	59.556	98.901	0.589
radA	Streptococcus pneumoniae D39	59.556	98.901	0.589
radA	Streptococcus pneumoniae R6	59.556	98.901	0.589
radA	Streptococcus pneumoniae TIGR4	59.556	98.901	0.589
radA	Streptococcus mitis NCTC 12261	59.556	98.901	0.589
radA	Streptococcus mitis SK321	59.556	98.901	0.589