Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JNUCC31_RS04445 Genome accession   NZ_CP062165
Coordinates   1024309..1024791 (-) Length   160 a.a.
NCBI ID   WP_323374361.1    Uniprot ID   -
Organism   Paenibacillus sp. JNUCC-31     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1019309..1029791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC31_RS04425 (JNUCC31_04425) - 1019727..1022648 (-) 2922 WP_192268872.1 insulinase family protein -
  JNUCC31_RS04435 (JNUCC31_04435) - 1023246..1023695 (-) 450 WP_192268874.1 general stress protein -
  JNUCC31_RS04440 (JNUCC31_04440) - 1023901..1024137 (+) 237 WP_192268877.1 hypothetical protein -
  JNUCC31_RS04445 (JNUCC31_04445) nucA/comI 1024309..1024791 (-) 483 WP_323374361.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JNUCC31_RS04450 (JNUCC31_04450) - 1024898..1026046 (-) 1149 WP_192268879.1 sensor histidine kinase -
  JNUCC31_RS04455 (JNUCC31_04455) - 1026348..1026536 (+) 189 WP_192268881.1 DUF6199 family natural product biosynthesis protein -
  JNUCC31_RS04460 (JNUCC31_04460) - 1026681..1027907 (+) 1227 WP_192268883.1 MFS transporter -
  JNUCC31_RS04465 (JNUCC31_04465) - 1027982..1028311 (-) 330 WP_192268885.1 DUF1904 family protein -
  JNUCC31_RS04470 (JNUCC31_04470) - 1028477..1028602 (-) 126 WP_192268887.1 sporulation protein YjcZ -
  JNUCC31_RS04475 (JNUCC31_04475) - 1028720..1029394 (-) 675 WP_192268889.1 hypothetical protein -
  JNUCC31_RS04480 (JNUCC31_04480) - 1029564..1029731 (-) 168 WP_192268891.1 hypothetical protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17704.19 Da        Isoelectric Point: 10.5378

>NTDB_id=486710 JNUCC31_RS04445 WP_323374361.1 1024309..1024791(-) (nucA/comI) [Paenibacillus sp. JNUCC-31]
MSRRRRRRKGKGNQRFKKQVFALVAMLMVALYAWVGGEWSLDLPSQLGGSSKHVDHTITFPSERYPETAKHIQTAINKGH
SDVCTIDRSGAEGNRDLSLKGVPVKKGKDRDEWPMAMCAEGGAGADIQYISPKDNRGAGSWVGNQLSTYPDGTRVKFVVK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=486710 JNUCC31_RS04445 WP_323374361.1 1024309..1024791(-) (nucA/comI) [Paenibacillus sp. JNUCC-31]
ATGAGTAGAAGACGCAGAAGGAGAAAGGGCAAGGGGAACCAGCGATTCAAAAAGCAGGTATTCGCGCTGGTTGCCATGTT
AATGGTTGCACTCTATGCCTGGGTTGGAGGGGAGTGGTCACTGGATCTTCCATCCCAATTAGGAGGAAGCAGCAAGCATG
TGGATCATACGATCACTTTCCCGTCAGAGCGGTATCCCGAAACGGCCAAACACATCCAAACGGCGATTAATAAAGGGCAT
TCGGATGTATGTACCATTGATCGAAGTGGGGCGGAGGGTAATCGTGATCTATCCCTCAAAGGTGTGCCCGTCAAAAAAGG
TAAAGATCGGGATGAATGGCCAATGGCGATGTGTGCGGAAGGTGGGGCGGGTGCAGATATTCAATATATTAGTCCTAAAG
ATAATCGTGGTGCAGGCTCATGGGTTGGAAACCAGTTAAGTACATATCCGGATGGGACACGAGTGAAGTTTGTAGTGAAG
TAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(64-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.957

71.875

0.481