Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PAGR_RS18350 Genome accession   NC_017554
Coordinates   3885388..3886770 (-) Length   460 a.a.
NCBI ID   WP_013024514.1    Uniprot ID   D4GJH6
Organism   Pantoea ananatis PA13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3880388..3891770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAGR_RS18325 (PAGR_g3574) - 3880824..3881513 (-) 690 WP_014606640.1 molecular chaperone -
  PAGR_RS18330 (PAGR_g3575) - 3881553..3882107 (-) 555 WP_014606641.1 fimbrial protein -
  PAGR_RS18335 (PAGR_g3576) - 3882350..3882799 (-) 450 WP_014606642.1 hypothetical protein -
  PAGR_RS18340 (PAGR_g3577) - 3882796..3883728 (-) 933 WP_014606643.1 winged helix-turn-helix domain-containing protein -
  PAGR_RS18345 (PAGR_g3578) nadR 3884057..3885295 (-) 1239 WP_014606644.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  PAGR_RS18350 (PAGR_g3579) radA 3885388..3886770 (-) 1383 WP_013024514.1 DNA repair protein RadA Machinery gene
  PAGR_RS18355 (PAGR_g3580) serB 3886784..3887761 (-) 978 WP_014595282.1 phosphoserine phosphatase -
  PAGR_RS18360 (PAGR_g3581) - 3887869..3888537 (+) 669 WP_014606645.1 YtjB family periplasmic protein -
  PAGR_RS18365 (PAGR_g3582) yjjG 3888666..3889346 (-) 681 WP_014606646.1 pyrimidine 5'-nucleotidase -
  PAGR_RS18370 (PAGR_g3583) rimI 3889366..3889806 (-) 441 WP_014606647.1 ribosomal protein S18-alanine N-acetyltransferase -
  PAGR_RS18375 (PAGR_g3584) - 3889778..3890188 (-) 411 WP_013024509.1 DNA polymerase III subunit psi -
  PAGR_RS18380 (PAGR_g3585) rsmC 3890294..3891325 (+) 1032 WP_014606648.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49450.09 Da        Isoelectric Point: 7.6663

>NTDB_id=48670 PAGR_RS18350 WP_013024514.1 3885388..3886770(-) (radA) [Pantoea ananatis PA13]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVMCRLAQNMKTLYVTGEESLQQVAMRAHRLGLPTENLNMLSETSIE
QICLIAEQEAPQIMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPAGNAPKKPIEGMRVYSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=48670 PAGR_RS18350 WP_013024514.1 3885388..3886770(-) (radA) [Pantoea ananatis PA13]
TTGGCCAAAGCGGCAAAACGCGCATTTGTTTGTAACGAGTGTGGCGCAGATTATCCGCGCTGGCAGGGGCAATGCAGCGC
CTGTCACGCCTGGAACACCATTACCGAGGTACGGATTGCCGCCTCACCCGCTGCAGCGCGCAATGAGCGCCTCAGCGGTT
ATGCGGGCAGTGCCGGGACCAGTCGGGTGCAAAAGCTGTCCGAAATCAGCCTGGAAGCCTTGCCCCGTTTCTCGACCAGC
TTTAAAGAATTTGACCGTGTGCTGGGCGGTGGCGTGGTGCCCGGCAGTGCCATTCTGATTGGTGGTAATCCCGGGGCCGG
TAAATCCACTTTGTTGCTGCAGGTCATGTGCCGCTTAGCGCAGAACATGAAAACGCTGTATGTCACCGGCGAAGAATCTT
TACAGCAGGTGGCAATGCGTGCCCATCGGCTGGGTTTGCCGACTGAAAACCTGAACATGCTGTCGGAAACCAGCATCGAA
CAGATCTGCCTGATCGCCGAGCAGGAAGCGCCGCAAATCATGGTCATCGACTCCATCCAGGTGATGCACATGGCCGATAT
CCAGTCTTCACCCGGCAGCGTCGCCCAGGTGCGCGAAACCGCCGCTTATCTGACGCGCTTTGCCAAAACCCGCGGCGTGG
CGATTATCATGGTGGGCCATGTCACCAAAGACGGATCGCTGGCCGGGCCGAAGGTCCTTGAGCACTGCATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCGCGCTTCCGCACCTTGCGCAGCCATAAAAACCGTTTTGGTGCCGTGAATGAACT
GGGGGTTTTTGCCATGACGGAGCAGGGCATGCGTGAGGTGAGCAATCCTTCCGCCATTTTCCTGTCGCGTGGTGAAGAGA
TTACGTCGGGCAGTTCGGTCATGGTGCTGTGGGAAGGAACCCGGCCATTGCTGGTCGAGATTCAGGCGCTGGTGGACCAT
TCGATGATGGGGAATCCCCGTCGTGTTGCCGTCGGGCTTGAACAAAACCGCCTGGCGATTCTGCTGGCGGTACTGCATCG
TCACGGTGGATTGCAAATGGCGGATCAGGATGTGTTCGTCAACGTCGTGGGCGGCGTGAAAGTCACAGAAACCAGCGCCG
ACCTGGCGCTGATGCTGTCAATGGTTTCCAGCCTGCGCGATCGCCCCTTGCCGCAGGATCTGGTTATCTTTGGCGAAGTC
GGGCTGGCCGGCGAAATTCGCCCGGTGCCCAGCGGCCAGGAACGGATTTCAGAAGCGGCTAAACATGGCTTCAAACGGGC
GATTGTGCCTGCCGGTAACGCGCCGAAAAAGCCGATTGAGGGCATGCGCGTCTACAGCGCGAAAAAGTTGGCGGATGCGC
TGGCGATTCTCGATGATCTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(87-225)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4GJH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.59

100

0.487
  radA Streptococcus mitis NCTC 12261

43.516

98.913

0.43
  radA Streptococcus pneumoniae Rx1

44.78

93.696

0.42
  radA Streptococcus pneumoniae D39

44.78

93.696

0.42
  radA Streptococcus pneumoniae R6

44.78

93.696

0.42
  radA Streptococcus pneumoniae TIGR4

44.78

93.696

0.42
  radA Streptococcus mitis SK321

44.78

93.696

0.42

Multiple sequence alignment