Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ICA18_RS06965 Genome accession   NZ_CP062164
Coordinates   1588529..1588930 (+) Length   133 a.a.
NCBI ID   WP_024711139.1    Uniprot ID   A0A855JH23
Organism   Xanthomonas arboricola pv. corylina strain A7     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583529..1593930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICA18_RS06945 (ICA18_06950) tsaB 1584752..1585471 (+) 720 WP_039816259.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  ICA18_RS06950 (ICA18_06955) - 1585468..1586382 (+) 915 WP_104613566.1 ADP-ribosylglycohydrolase family protein -
  ICA18_RS06955 (ICA18_06960) - 1586468..1587343 (-) 876 WP_039816263.1 energy transducer TonB -
  ICA18_RS06960 (ICA18_06965) gshB 1587340..1588290 (-) 951 WP_024940329.1 glutathione synthase -
  ICA18_RS06965 (ICA18_06970) pilG 1588529..1588930 (+) 402 WP_024711139.1 twitching motility response regulator PilG Regulator
  ICA18_RS06970 (ICA18_06975) - 1588948..1589310 (+) 363 WP_024940328.1 response regulator -
  ICA18_RS06975 (ICA18_06980) - 1589310..1589840 (+) 531 WP_003482487.1 chemotaxis protein CheW -
  ICA18_RS06980 (ICA18_06985) - 1589880..1591916 (+) 2037 WP_039816268.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14681.06 Da        Isoelectric Point: 6.9539

>NTDB_id=486696 ICA18_RS06965 WP_024711139.1 1588529..1588930(+) (pilG) [Xanthomonas arboricola pv. corylina strain A7]
MTENIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=486696 ICA18_RS06965 WP_024711139.1 1588529..1588930(+) (pilG) [Xanthomonas arboricola pv. corylina strain A7]
ATGACTGAAAACATTGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTGATCGATGATTCGAAGACCATTCGCCG
CACCGCCGAAACGCTGCTGAAGCGGGAAGGCTGTGAAGTAGTGACAGCAACCGATGGTTTCGAGGCACTGGCCAAGATTG
CCGACCAGCAACCTCAGATCATTTTTGTCGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAGTCGACGCCGGTGATCATGTTGTCGTCCAAGGACGGCCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGCTCCGAGCAATATCTGACCAAGCCGTTCACACGTGAAGAACTACTGAGCGCGATTCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855JH23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684