Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JNUCC41_RS25720 Genome accession   NZ_CP062163
Coordinates   5329349..5331064 (-) Length   571 a.a.
NCBI ID   WP_192205452.1    Uniprot ID   -
Organism   Brevibacillus sp. JNUCC-41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5324349..5336064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC41_RS25695 (JNUCC41_25695) - 5325262..5325498 (+) 237 WP_192205447.1 DUF2627 domain-containing protein -
  JNUCC41_RS25700 (JNUCC41_25700) - 5325542..5326276 (-) 735 WP_192205448.1 glycerophosphodiester phosphodiesterase -
  JNUCC41_RS25705 (JNUCC41_25705) - 5326390..5326539 (-) 150 WP_192205449.1 hypothetical protein -
  JNUCC41_RS25710 (JNUCC41_25710) spo0A 5326773..5327564 (-) 792 WP_192205450.1 sporulation transcription factor Spo0A -
  JNUCC41_RS25715 (JNUCC41_25715) spoIVB 5327895..5329187 (-) 1293 WP_192205451.1 SpoIVB peptidase -
  JNUCC41_RS25720 (JNUCC41_25720) recN 5329349..5331064 (-) 1716 WP_192205452.1 DNA repair protein RecN Machinery gene
  JNUCC41_RS25725 (JNUCC41_25725) argR 5331087..5331536 (-) 450 WP_034308279.1 transcriptional regulator ArgR -
  JNUCC41_RS25730 (JNUCC41_25730) - 5331864..5332691 (-) 828 WP_192205453.1 TlyA family RNA methyltransferase -
  JNUCC41_RS25735 (JNUCC41_25735) dxs 5332696..5334588 (-) 1893 WP_192205454.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JNUCC41_RS25740 (JNUCC41_25740) - 5335063..5335956 (-) 894 WP_192205455.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64407.43 Da        Isoelectric Point: 5.2172

>NTDB_id=486684 JNUCC41_RS25720 WP_192205452.1 5329349..5331064(-) (recN) [Brevibacillus sp. JNUCC-41]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEELGIDMNDGMAILRRDISLSGKSVCRVNGKLVTIAILREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKNSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQKFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDKGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=486684 JNUCC41_RS25720 WP_192205452.1 5329349..5331064(-) (recN) [Brevibacillus sp. JNUCC-41]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACGGTCTT
GACAGGAGAAACAGGGGCAGGGAAGTCAATCATAATAGATGCCGTTCATCTTTTGGTTGGGGGACGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCGAAGGCTGAAATAGAAGGATTATTCCAAATTGAAGATGAAAAACACCCCGTCTTTGCCAAG
GCGGAAGAGTTGGGCATCGATATGAATGATGGGATGGCGATACTTCGAAGGGATATCTCACTGAGCGGCAAAAGCGTTTG
CAGGGTAAACGGAAAGCTTGTAACGATTGCCATCTTACGTGAGATAGGGCGGACGTTGATAGATATCCATGGCCAGCATG
AACATCAGGAATTAATGGACGAACGACTCCATCTTCCACTGCTCGATCAATTCGGCGGTGAAAAGATCGCATCTGCACTC
ACTGAATACCAAAAGCTATATAAACGTTATGAAACCGCTTCTAAACAATTGAATGGTTTGAGCCAAAATGAACAGCAAAT
GGTCCACCGCCTTGATTTGATCCAATTTCAATTCGATGAAATCCAAAAAGCTGATTTGAAATTACGCGAAGATGAAGAAT
TGATGGAAGAGCGGAAGAAAATTAATAATTTTGAAAAAATCCATGAAGCGCTGCAAACCAGTTATAATGCTTTAAATGGT
GAGCAGCATGCAATTGATTGGCTTTCCGTAGCCATGAATAATTTGGAGGAAGCGGCAGGGCTTGATGAAGGTTTAAAGAA
CAGCTCTGAAACCGTTTCAAATAGCTACTTCCTGCTTGAAGAGGCCGTGTCTAACATCCGTGACCAATTAGACTCTTTGG
ATTATGATACAGAACGAGTGGAATTCATTGAAAGTCGCCTTAATGAAATAAATCAATTAAAGCGTAAATACGGGCGGACC
ATCGAGGAAATCCTGGAATATGGGGCCGCTATTGAAGAAGAAGTCGAAAAACTTCAAAATAGGGAAACCCATATAGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCAGATTTAATTGTCGAAGCAAAGAACCTGTCTGAACTTCGCCAGAAATTCG
CTCAGCAGCTTACAAAAAAGATTCATCAGGAATTAAAAGATTTATACATGGAAAAGACAATTTTCGAACCACATTTCCTT
CAAACGGCCTATACTTTCGATGAATTGTCAGATAAGGGCATCAATCAGTCAGGGCTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGTGAACCATTAAAACCTCTATCTAAAATCGCTTCTGGTGGTGAACTGTCGAGGATCATGCTTGCATTGA
AAAGCATATTCTCCAAGCACCAAGGCATAACGTCCATTATCTTTGATGAAGTGGACACAGGTGTGAGCGGACGGGTTGCG
CAATCCATTGCAGAAAAGATCTATAAAGTGGCAACTGGATCACAAGTACTGTGCATATCCCATTTGCCACAGGTGGCAGC
TATGGCGGATACTCACCTTTTCATAGCGAAAAATGTAAGGGCCGGACGCACGAATACCTCGGTAAAGCCGTTAATTGAAA
CTGAAAAAATAAAAGAAATTGGCAGGATGATTTCAGGAGTAGAGATAACGGATTTGACTAAACAGCATGCCAATGAATTA
ATCCAGCTTGCCAAAAGGTTGAAGATAACATCTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.111

100

0.616