Detailed information NTG0486669

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KCG37_RS06840
• Genome accession: NZ_CP073082
• Coordinates: 1465644..1466648 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain WTJH17
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1460644..1471648

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KCG37_RS06810 (KCG37_06810)	fghA	1460736..1461587 (+)	852	WP_003122149.1	S-formylglutathione hydrolase	-
KCG37_RS06815 (KCG37_06815)	ispF	1461658..1462131 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KCG37_RS06820 (KCG37_06820)	truD	1462128..1463195 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
KCG37_RS06825 (KCG37_06825)	surE	1463183..1463932 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
KCG37_RS06830 (KCG37_06830)	-	1463965..1464600 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
KCG37_RS06835 (KCG37_06835)	-	1464646..1465539 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
KCG37_RS06840 (KCG37_06840)	rpoS	1465644..1466648 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
KCG37_RS06845 (KCG37_06845)	fdxA	1467074..1467397 (-)	324	WP_003092272.1	ferredoxin FdxA	-
KCG37_RS06850 (KCG37_06850)	mutS	1467464..1470031 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
KCG37_RS06855 (KCG37_06855)	-	1470157..1471164 (-)	1008	Protein_1359	TolB-like translocation protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=486669 KCG37_RS06840 WP_003113871.1 1465644..1466648(+) (rpoS) [Pseudomonas aeruginosa strain WTJH17]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=486669 KCG37_RS06840 WP_003113871.1 1465644..1466648(+) (rpoS) [Pseudomonas aeruginosa strain WTJH17]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653