Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JNUCC41_RS09525 Genome accession   NZ_CP062163
Coordinates   1921241..1922629 (+) Length   462 a.a.
NCBI ID   WP_076372905.1    Uniprot ID   A0A9W4PDJ3
Organism   Brevibacillus sp. JNUCC-41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1916241..1927629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC41_RS09505 (JNUCC41_09505) - 1916363..1916824 (+) 462 WP_048677843.1 CtsR family transcriptional regulator -
  JNUCC41_RS09510 (JNUCC41_09510) - 1916846..1917397 (+) 552 WP_192207426.1 UvrB/UvrC motif-containing protein -
  JNUCC41_RS09515 (JNUCC41_09515) - 1917394..1918470 (+) 1077 WP_192207427.1 protein arginine kinase -
  JNUCC41_RS09520 (JNUCC41_09520) clpC 1918601..1921042 (+) 2442 WP_192207428.1 ATP-dependent protease ATP-binding subunit ClpC -
  JNUCC41_RS09525 (JNUCC41_09525) radA 1921241..1922629 (+) 1389 WP_076372905.1 DNA repair protein RadA Machinery gene
  JNUCC41_RS09530 (JNUCC41_09530) disA 1922632..1923705 (+) 1074 WP_192207429.1 DNA integrity scanning diadenylate cyclase DisA -
  JNUCC41_RS09535 (JNUCC41_09535) - 1923931..1925028 (+) 1098 WP_192207430.1 PIN/TRAM domain-containing protein -
  JNUCC41_RS09540 (JNUCC41_09540) ispD 1925050..1925736 (+) 687 WP_192207431.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JNUCC41_RS09545 (JNUCC41_09545) ispF 1925751..1926230 (+) 480 WP_134784433.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50175.81 Da        Isoelectric Point: 8.2345

>NTDB_id=486668 JNUCC41_RS09525 WP_076372905.1 1921241..1922629(+) (radA) [Brevibacillus sp. JNUCC-41]
MAVKKKTKFMCQSCGYESPKWMGKCPGCGEWNKMVEETEIVKPARKGAFTNSEVRGSGEREKAAPITTIQSEKEPRIKTD
LMELNRALGGGIVQGSLVLIGGDPGIGKSTLLLQVSSQLAHKQKKVLYISGEESVKQTKLRADRLGTMSENLFVYAETDM
DYIQQAITDVKPDLVIIDSIQTVYHSEVTSAPGSVSQVRECTASLMRIAKTNGIAIFIVGHVTKEGAIAGPRLLEHMVDT
VLYFEGERHHTYRIIRAVKNRFGSTNEMGIFEMKEHGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALIS
PTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAISIASSFRDKPTNPADCIIGE
VGLTGEVRRVSRIEQRVQEAAKLGFERVIIPANNIGGWTAPKGIKIVGVSSVSEALKQSLGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=486668 JNUCC41_RS09525 WP_076372905.1 1921241..1922629(+) (radA) [Brevibacillus sp. JNUCC-41]
ATGGCTGTAAAGAAGAAAACAAAATTTATGTGTCAGTCTTGTGGATACGAGTCACCGAAATGGATGGGGAAATGCCCAGG
ATGCGGTGAATGGAACAAAATGGTCGAGGAAACCGAAATCGTTAAACCTGCTAGAAAAGGCGCCTTTACCAATTCAGAGG
TTAGAGGTTCCGGGGAACGGGAGAAGGCAGCTCCGATAACGACTATTCAATCAGAAAAAGAACCCCGGATTAAGACGGAT
TTAATGGAATTGAATCGTGCTCTTGGGGGCGGGATCGTACAGGGATCACTTGTATTGATCGGAGGAGACCCTGGTATCGG
TAAGTCCACCCTGCTTTTACAAGTATCATCGCAATTGGCGCATAAACAGAAAAAAGTGCTTTATATTTCAGGTGAAGAAT
CAGTCAAGCAGACTAAATTGAGAGCGGATCGGCTTGGGACCATGTCGGAGAATCTATTCGTTTATGCTGAAACCGATATG
GATTATATTCAACAGGCAATTACGGATGTAAAACCGGATTTGGTCATTATTGACTCCATTCAAACGGTATATCATTCGGA
GGTTACATCCGCCCCGGGAAGCGTTTCACAAGTGAGGGAGTGCACAGCCTCACTCATGCGCATTGCTAAAACGAACGGAA
TCGCGATTTTTATCGTCGGACACGTTACAAAGGAAGGGGCCATCGCGGGGCCACGGCTGCTTGAGCACATGGTTGATACT
GTATTATATTTTGAAGGTGAAAGACACCATACATATCGAATTATACGTGCGGTTAAAAATCGCTTTGGTTCGACGAATGA
GATGGGTATTTTTGAAATGAAAGAACATGGGTTGGAAGAGGTCGCGAATCCATCGGAAATATTCCTTGAAGAACGGTCGC
AAGGAGCCTCGGGTTCCACAGTCGTCGCATCCATGGAGGGAACAAGGCCGGTGCTAGTTGAAATTCAAGCATTGATTTCT
CCTACGAGTTTTGGCAATCCGAGGCGAATGGCCACGGGAATCGACCACAATCGAGTTTCGCTTTTAATGGCTGTTCTGGA
AAAGAGAGTGGGCTTGCTGCTCCAAAACCAAGATGCGTATTTAAAGGTTGCCGGTGGTGTCAAGCTGGATGAACCTGCAA
TTGATCTCGCTGTCGCAATAAGCATTGCTTCAAGCTTCCGTGATAAACCAACAAACCCTGCTGATTGCATCATTGGTGAA
GTGGGGCTGACTGGTGAGGTGAGAAGGGTGTCAAGAATTGAACAAAGGGTGCAGGAAGCAGCAAAATTAGGGTTTGAGCG
AGTTATCATACCGGCTAATAATATAGGGGGATGGACCGCGCCGAAAGGTATTAAGATCGTTGGTGTTTCATCGGTTTCGG
AGGCTCTTAAACAATCGTTAGGGGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(369-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.174

99.567

0.768
  radA Streptococcus mitis NCTC 12261

62.418

98.485

0.615
  radA Streptococcus pneumoniae Rx1

61.978

98.485

0.61
  radA Streptococcus pneumoniae D39

61.978

98.485

0.61
  radA Streptococcus pneumoniae R6

61.978

98.485

0.61
  radA Streptococcus pneumoniae TIGR4

61.978

98.485

0.61
  radA Streptococcus mitis SK321

61.758

98.485

0.608