Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilR   Type   Regulator
Locus tag   IGX38_RS18460 Genome accession   NZ_CP062162
Coordinates   3898981..3900318 (+) Length   445 a.a.
NCBI ID   WP_026006503.1    Uniprot ID   A0A137YGV3
Organism   Stutzerimonas stutzeri strain 2020WEIHUA_G     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 3893981..3905318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGX38_RS18435 (IGX38_18395) pgeF 3894011..3894748 (-) 738 WP_181119883.1 peptidoglycan editing factor PgeF -
  IGX38_RS18440 (IGX38_18400) rluD 3894745..3895719 (-) 975 WP_011914661.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IGX38_RS18445 (IGX38_18405) - 3895924..3896913 (+) 990 WP_242100287.1 outer membrane protein assembly factor BamD -
  IGX38_RS18450 (IGX38_18410) - 3897035..3897268 (+) 234 WP_013984074.1 PP0621 family protein -
  IGX38_RS18455 (IGX38_18415) pilS 3897258..3898850 (+) 1593 WP_048329924.1 sensor histidine kinase Regulator
  IGX38_RS18460 (IGX38_18420) pilR 3898981..3900318 (+) 1338 WP_026006503.1 sigma-54-dependent transcriptional regulator Regulator
  IGX38_RS18465 (IGX38_18425) - 3900362..3901420 (-) 1059 WP_011914666.1 DUF2333 family protein -
  IGX38_RS18470 (IGX38_18430) - 3901638..3903233 (+) 1596 WP_014597755.1 response regulator -

Sequence


Protein


Download         Length: 445 a.a.        Molecular weight: 49558.09 Da        Isoelectric Point: 6.4140

>NTDB_id=486630 IGX38_RS18460 WP_026006503.1 3898981..3900318(+) (pilR) [Stutzerimonas stutzeri strain 2020WEIHUA_G]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARELLAREHYDLCLTDMRLPDGSGLELVQHIQQQYPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVSTALRLRAPAAEAPVDSRLLGSSPPMKTLRKQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEKPFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGAQEVMVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLADVM
LRRLAQECGEATARLHPDALAKLENYRFPGNVRELENMLERAYTLCEGDEIKAGDLRLADSPGLPENGEASLAQIDNLED
HLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=486630 IGX38_RS18460 WP_026006503.1 3898981..3900318(+) (pilR) [Stutzerimonas stutzeri strain 2020WEIHUA_G]
ATGACCGCGCGCCAGAAAGCCCTGATCATCGACGACGAGCCGGACATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCAT
GAAGCTCGATACCCGCAGCGCACGCAACCTCAAGGAGGCGCGCGAGCTGCTGGCACGCGAGCACTACGACCTGTGCCTGA
CCGATATGCGCCTGCCCGACGGCAGTGGCCTTGAGCTGGTCCAGCACATCCAGCAACAGTACCCACAACTGCCCGTGGCG
ATGATCACCGCCTATGGCAGCCTGGATACCGCCATCGGTGCACTCAAGGCCGGTGCGTTCGACTTCCTCACCAAACCGGT
GGACCTGAACCGCCTGCGCGAGCTGGTCAGTACCGCCCTGCGCCTGCGCGCGCCCGCAGCCGAAGCGCCGGTGGACAGTC
GCCTGCTGGGCAGCTCGCCGCCGATGAAAACCTTGCGCAAGCAGATCGGCAAGCTCGCCCGCAGCCAGGCACCCGTCTAC
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAACTGGTGGCACGCCTGATTCACGAGCAGGGCCCGCGCAGCGAAAAGCCATT
CGTGCCGGTCAACTGCGGTGCCATTCCGTCGGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCAGCG
GCGCCATCGAGGACAAGCCCGGCCTGTTCCAGGCCGCCAACGGTGGCACGCTGTTTCTCGACGAGGTGGCGGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGTGCCGTTGGCGGTGCGCAGGAAGTGATGGT
CGATGTACGCATCCTCTGCGCCACCCACAAGGATCTCGCCAGCGAGGTCGCCGCAGGCCGTTTTCGCCAGGATCTCTACT
ACCGCCTGAACGTCATCGAACTGCGTGTACCGCCACTACGCGAACGCCGCGAAGACATCGGCCTGCTCGCCGATGTCATG
CTGCGCCGCCTGGCGCAGGAATGCGGCGAGGCCACGGCCCGCCTGCATCCCGATGCCCTGGCCAAGCTGGAGAACTATCG
CTTTCCGGGCAACGTCCGCGAGCTGGAGAATATGCTCGAACGCGCCTACACCCTGTGCGAAGGCGACGAGATCAAGGCTG
GCGACCTGCGCCTGGCGGATAGCCCAGGCCTGCCGGAAAACGGCGAAGCCAGCCTGGCGCAGATCGACAACCTGGAGGAC
CACCTGGAGGAGATCGAGCGCAAGCTGATCATGCAGGCCCTCGAAGAAACACGCTGGAACCGCACCGCGGCTGCCCAGCG
ACTGGGGCTGACCTTCCGCTCGATGCGCTACCGTCTGAAGAAACTCGGACTGGACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A137YGV3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

85.586

99.775

0.854

  pilR Acinetobacter baumannii strain A118

50.545

100

0.521

  luxO Vibrio cholerae strain A1552

38.117

100

0.382