Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KCG38_RS30555 Genome accession   NZ_CP073080
Coordinates   6527292..6527888 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain NDTH9845     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6522292..6532888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG38_RS30535 (KCG38_30535) aroK 6523423..6523941 (-) 519 WP_003095833.1 shikimate kinase AroK -
  KCG38_RS30540 (KCG38_30540) pilQ 6523953..6526097 (-) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  KCG38_RS30545 (KCG38_30545) comL/pilP 6526151..6526675 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  KCG38_RS30550 (KCG38_30550) pilO 6526672..6527295 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  KCG38_RS30555 (KCG38_30555) pilN 6527292..6527888 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  KCG38_RS30560 (KCG38_30560) pilM 6527888..6528952 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  KCG38_RS30565 (KCG38_30565) - 6529137..6531608 (+) 2472 WP_031756300.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=486630 KCG38_RS30555 WP_003095839.1 6527292..6527888(-) (pilN) [Pseudomonas aeruginosa strain NDTH9845]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=486630 KCG38_RS30555 WP_003095839.1 6527292..6527888(-) (pilN) [Pseudomonas aeruginosa strain NDTH9845]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCACTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369