Detailed information NTG0486623

Bioinformatically predicted

Overview

• Name: radA/sms
• Type: Machinery gene
• Locus tag: KCG38_RS28200
• Genome accession: NZ_CP073080
• Coordinates: 6006442..6007803 (-)
• Length: 453 a.a.
• NCBI ID: WP_017002524.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain NDTH9845
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 6001442..6012803

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KCG38_RS28175 (KCG38_28175)	yjiA	6001629..6002633 (-)	1005	WP_003094852.1	GTPase	-
KCG38_RS28180 (KCG38_28180)	-	6002693..6002896 (-)	204	WP_003094856.1	YbdD/YjiX family protein	-
KCG38_RS28185 (KCG38_28185)	-	6002945..6005011 (-)	2067	WP_003094859.1	carbon starvation CstA family protein	-
KCG38_RS28190 (KCG38_28190)	-	6005349..6005855 (-)	507	WP_003094862.1	DUF3015 domain-containing protein	-
KCG38_RS28195 (KCG38_28195)	mapZ	6006058..6006435 (+)	378	WP_003094864.1	cyclic di-GMP-binding protein MapZ	-
KCG38_RS28200 (KCG38_28200)	radA/sms	6006442..6007803 (-)	1362	WP_017002524.1	DNA repair protein RadA	Machinery gene
KCG38_RS28205 (KCG38_28205)	-	6007913..6008347 (+)	435	WP_003104889.1	CopD family protein	-
KCG38_RS28210 (KCG38_28210)	-	6008409..6008663 (-)	255	WP_003104887.1	YdcH family protein	-
KCG38_RS28215 (KCG38_28215)	-	6008738..6009289 (-)	552	WP_004347822.1	ankyrin repeat domain-containing protein	-
KCG38_RS28220 (KCG38_28220)	katB	6009343..6010884 (-)	1542	WP_003094881.1	catalase KatB	-
KCG38_RS28225 (KCG38_28225)	-	6010991..6011368 (-)	378	WP_153576207.1	hypothetical protein	-
KCG38_RS28230 (KCG38_28230)	mscL	6011411..6011824 (+)	414	WP_003104883.1	large-conductance mechanosensitive channel protein MscL	-
KCG38_RS28235 (KCG38_28235)	-	6011929..6012705 (-)	777	WP_003104882.1	ferredoxin--NADP reductase	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 48380.78 Da
• Isoelectric Point: 6.8357

>NTDB_id=486623 KCG38_RS28200 WP_017002524.1 6006442..6007803(-) (radA/sms) [Pseudomonas aeruginosa strain NDTH9845]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVEAAPSGSGRGGWAGQQANLKTLAEVSVEEMPRFTTGSAELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLASRVPALYVTGEESQQQVAMRARRLSLPEDKLKVMTETSIETIIATA
RQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPLGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide

• Length: 1362 bp

>NTDB_id=486623 KCG38_RS28200 WP_017002524.1 6006442..6007803(-) (radA/sms) [Pseudomonas aeruginosa strain NDTH9845]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGCGCGGACTG
CGGGGCCTGGAACACCCTGGTGGAGACCGTCGTCGAGGCCGCGCCGAGCGGCTCCGGGCGCGGCGGCTGGGCCGGCCAGC
AGGCCAACCTGAAGACCCTGGCGGAGGTCAGCGTCGAGGAAATGCCGCGCTTCACGACCGGCTCCGCCGAACTGGACCGG
GTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCATTCTCCT
GCAGACCCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTGTACGTCACCGGAGAGGAATCCCAGCAGCAGGTGGCGATGC
GCGCGCGGCGCCTGTCGTTGCCGGAAGACAAGCTCAAGGTGATGACCGAGACCAGCATCGAGACCATCATCGCCACCGCG
CGCCAGGAGCAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCGCCGGGCGG
CGTCGCCCAGGTCCGCGAGAGCGCCGCGATGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTTCTGGTCGGCC
ACGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTCGAACACATGGTCGACACCGTACTGTATTTCGAGGGCGAA
TCAGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGAGTGTTCGGCATGAC
CGACAAAGGCCTGAAGGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCTCGCGACCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACACCAGTCACCTGGCGAATCCG
CGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGGTGGTATCCCGAC
CTACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGATGGCGG
CGGTGATGTCCAGCCTGCGCAACCGCCCGCTGCCGCACGACCTGCTGGTGTTCGGCGAGGTCGGGCTGTCCGGCGAGGTG
CGTCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCATGGTTTCAAGCGTGCCATCGTACCCCTCGGCAA
CGCGCCGAAGGAGGCGCCGGCGGGATTGCAGGTGATCGCCGTGACGCGCCTCGAGCAGGCCCTGGACGCCCTCTTCGAGT
GA

Domains

Predicted by InterProScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (75-219)

• Subunit ChlI of Mg-chelatase (ChlI) (361-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA/sms	Bacillus subtilis subsp. subtilis str. 168	48.458	100	0.486
radA	Streptococcus pneumoniae Rx1	46.288	100	0.468
radA	Streptococcus pneumoniae D39	46.288	100	0.468
radA	Streptococcus pneumoniae R6	46.288	100	0.468
radA	Streptococcus pneumoniae TIGR4	46.288	100	0.468
radA	Streptococcus mitis SK321	46.389	100	0.468
radA	Streptococcus mitis NCTC 12261	46.171	100	0.466