Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   IGX38_RS04610 Genome accession   NZ_CP062162
Coordinates   967533..968090 (-) Length   185 a.a.
NCBI ID   WP_106443564.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain 2020WEIHUA_G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 962533..973090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGX38_RS04600 (IGX38_04585) - 966083..966688 (-) 606 WP_061374034.1 PilX N-terminal domain-containing pilus assembly protein -
  IGX38_RS04605 (IGX38_04590) - 966685..967536 (-) 852 WP_186416308.1 PilW family protein -
  IGX38_RS04610 (IGX38_04595) pilV 967533..968090 (-) 558 WP_106443564.1 type IV pilus modification protein PilV Machinery gene
  IGX38_RS04615 (IGX38_04600) - 968099..968590 (-) 492 WP_013981877.1 GspH/FimT family pseudopilin -
  IGX38_RS04620 (IGX38_04605) - 968758..969252 (-) 495 WP_186416309.1 GspH/FimT family pseudopilin -
  IGX38_RS04625 (IGX38_04610) thiO 969406..970503 (+) 1098 WP_242100597.1 glycine oxidase ThiO -
  IGX38_RS04630 (IGX38_04615) - 970652..971023 (+) 372 WP_014595914.1 translation initiation factor Sui1 -
  IGX38_RS04635 (IGX38_04620) speA 971146..973059 (+) 1914 WP_192476048.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20162.90 Da        Isoelectric Point: 4.5666

>NTDB_id=486610 IGX38_RS04610 WP_106443564.1 967533..968090(-) (pilV) [Stutzerimonas stutzeri strain 2020WEIHUA_G]
MKTNKGFSLIEVLVALLLTTIGVLGMVALQGRSIQYTQDSVQRNTAILLSGDLIEIIRAHPKELFNTSPPQFPMNSGLKS
SSMFYKEAGSDFIDRESCVASPTRIAQTAKELRDCWADKLEAALPGGAELFDSDTYICRSSTPGSCDGQGSMLEIHMAWQ
VREGACLDSSNTDDTVCTYTVRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=486610 IGX38_RS04610 WP_106443564.1 967533..968090(-) (pilV) [Stutzerimonas stutzeri strain 2020WEIHUA_G]
ATGAAAACCAATAAAGGCTTCAGCCTGATCGAAGTGCTCGTAGCGCTACTGCTGACCACTATCGGAGTACTTGGAATGGT
GGCGCTGCAAGGCCGCAGCATCCAATACACCCAGGACTCCGTACAACGCAACACGGCCATTCTTCTGTCCGGAGACCTTA
TCGAAATCATACGGGCACACCCGAAAGAGCTTTTCAACACCTCCCCTCCACAGTTCCCCATGAACAGCGGGTTAAAAAGC
AGCTCGATGTTCTACAAGGAGGCCGGAAGCGATTTCATTGATCGTGAAAGCTGCGTCGCTAGCCCGACCCGAATAGCGCA
GACAGCAAAAGAGTTGCGTGACTGCTGGGCGGACAAGCTGGAAGCGGCGCTACCTGGCGGAGCCGAGCTGTTCGACAGCG
ATACCTACATCTGCCGAAGCTCCACGCCGGGCAGTTGCGACGGCCAGGGCTCGATGCTCGAGATTCATATGGCCTGGCAA
GTTCGAGAAGGCGCCTGTCTCGACTCGAGCAATACCGACGACACCGTCTGCACCTATACCGTTCGGGTAGAACCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

49.18

98.919

0.486