Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IHE43_RS03410 Genome accession   NZ_CP062159
Coordinates   813034..814395 (-) Length   453 a.a.
NCBI ID   WP_192186687.1    Uniprot ID   A0A7L8UEL5
Organism   Flavobacterium sp. MDT1-60     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 808034..819395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHE43_RS03395 (IHE43_03395) - 808682..809626 (+) 945 WP_192186684.1 OmpA family protein -
  IHE43_RS03400 (IHE43_03400) - 809900..810937 (+) 1038 WP_192186685.1 aldo/keto reductase -
  IHE43_RS03405 (IHE43_03405) - 811050..813014 (-) 1965 WP_192186686.1 transglycosylase domain-containing protein -
  IHE43_RS03410 (IHE43_03410) radA 813034..814395 (-) 1362 WP_192186687.1 DNA repair protein RadA Machinery gene
  IHE43_RS03415 (IHE43_03415) - 814395..815549 (-) 1155 WP_192186688.1 alpha/beta hydrolase -
  IHE43_RS03420 (IHE43_03420) panD 815755..816105 (-) 351 WP_026984155.1 aspartate 1-decarboxylase -
  IHE43_RS03425 (IHE43_03425) panC 816120..816998 (-) 879 WP_192186689.1 pantoate--beta-alanine ligase -
  IHE43_RS03430 (IHE43_03430) - 817077..817883 (+) 807 WP_056188595.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49797.32 Da        Isoelectric Point: 6.3732

>NTDB_id=486575 IHE43_RS03410 WP_192186687.1 813034..814395(-) (radA) [Flavobacterium sp. MDT1-60]
MSKVKTSFFCQNCGTQYAKWQGQCNACKEWNTIAEEIIQKQEKVAWKSEPTATGKVPRPLKINEIDSAQEIRMDTTDGEL
NRVLGGGIVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERITPNSDNCYILTETKTQNIFKQI
EAIQPEIVIIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKETNIPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAELGIYEMLGSGLREVSNPSEILISHKDEEMSGTAIATTMEGMRPLMIEIQSLVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVTKGFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFNTIFVSKYNKIALKNTGIKIELVAKIEDVASILFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=486575 IHE43_RS03410 WP_192186687.1 813034..814395(-) (radA) [Flavobacterium sp. MDT1-60]
ATGTCAAAAGTTAAAACTTCCTTTTTTTGTCAGAATTGCGGAACCCAATATGCCAAATGGCAAGGGCAATGCAATGCCTG
CAAAGAATGGAATACTATTGCCGAAGAAATCATTCAGAAGCAGGAAAAAGTCGCCTGGAAAAGTGAACCGACGGCAACCG
GTAAAGTACCGCGTCCGTTAAAAATCAATGAAATTGATTCGGCTCAGGAAATCCGAATGGACACCACTGATGGCGAATTG
AATCGTGTTTTAGGCGGCGGAATCGTTCCTGGCTCTTTAACGCTTTTAGGAGGTGAGCCGGGAATAGGAAAAAGCACCCT
TTTGCTTCAAATTTCATTAAAATTACCCTATAAAACTTTATATGTTTCTGGTGAAGAAAGTCAGAAACAAATAAAAATGC
GTGCCGAAAGAATTACGCCGAATAGTGACAATTGCTACATTCTGACAGAAACGAAAACGCAAAATATCTTCAAACAAATT
GAAGCCATTCAACCCGAAATTGTCATTATCGATTCGATTCAAACTTTACATACGGATTATATTGAATCAACGGCTGGGAG
TATTTCTCAAATTAGAGAAACAACGGCCGAGTTAATCAAATTTGCTAAGGAAACCAATATTCCGGTTATTCTAATCGGAC
ATATTACGAAAGACGGAAATATCGCCGGACCAAAGATTTTAGAACATATGGTCGATACCGTTTTGCAATTTGAAGGCGAT
CGAAATCACGTTTACCGAATTTTACGTTCCTTAAAAAATCGTTTTGGCTCAACAGCTGAATTGGGAATTTATGAAATGTT
AGGAAGCGGTTTGCGAGAAGTAAGCAATCCTTCAGAAATATTGATTTCCCATAAAGACGAAGAGATGTCCGGAACTGCGA
TTGCCACTACGATGGAAGGTATGCGTCCGTTAATGATCGAAATACAATCGCTTGTGAGTACCGCAGTTTACGGAACACCT
CAGCGAAGCACTACAGGTTACAACGCAAAGAGACTAAACATGATATTGGCTGTTTTAGAAAAAAGAGCCGGATTTCGTTT
AGGTGCCAAAGATGTTTTTCTGAACGTAACAGGTGGAATTTCAGTCGATGATCCTGCAATAGACTTAGCCGTTGTTGCCG
CCATTTTGTCTTCAAACGAAGACATTCCGGTTACAAAAGGTTTTTGTTTTGCCGGAGAAGTTGGTCTTTCAGGAGAAATT
CGTCCGGTAAACCGCGTAGATCAGCGTATTCAGGAAGCTGAAAAATTAGGCTTCAATACTATCTTTGTATCCAAATACAA
TAAAATCGCCTTAAAAAATACCGGAATCAAGATTGAGCTTGTTGCTAAAATTGAAGATGTAGCCAGTATTTTATTTGGTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L8UEL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.702

100

0.481
  radA Streptococcus pneumoniae Rx1

50.82

94.26

0.479
  radA Streptococcus pneumoniae D39

50.82

94.26

0.479
  radA Streptococcus pneumoniae R6

50.82

94.26

0.479
  radA Streptococcus pneumoniae TIGR4

50.82

94.26

0.479
  radA Streptococcus mitis SK321

50.82

94.26

0.479
  radA Streptococcus mitis NCTC 12261

50.82

94.26

0.479