Detailed information NTG0486566

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KCG38_RS07105
• Genome accession: NZ_CP073080
• Coordinates: 1504744..1505748 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain NDTH9845
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1499744..1510748

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KCG38_RS07075 (KCG38_07075)	fghA	1499836..1500687 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
KCG38_RS07080 (KCG38_07080)	ispF	1500758..1501231 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KCG38_RS07085 (KCG38_07085)	truD	1501228..1502295 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
KCG38_RS07090 (KCG38_07090)	surE	1502283..1503032 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
KCG38_RS07095 (KCG38_07095)	-	1503065..1503700 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
KCG38_RS07100 (KCG38_07100)	-	1503746..1504639 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
KCG38_RS07105 (KCG38_07105)	rpoS	1504744..1505748 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
KCG38_RS07110 (KCG38_07110)	fdxA	1506174..1506497 (-)	324	WP_003092272.1	ferredoxin FdxA	-
KCG38_RS07115 (KCG38_07115)	mutS	1506564..1509131 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
KCG38_RS07120 (KCG38_07120)	-	1509257..1510264 (-)	1008	WP_191519407.1	PD40 domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=486566 KCG38_RS07105 WP_003113871.1 1504744..1505748(+) (rpoS) [Pseudomonas aeruginosa strain NDTH9845]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=486566 KCG38_RS07105 WP_003113871.1 1504744..1505748(+) (rpoS) [Pseudomonas aeruginosa strain NDTH9845]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
TCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTTGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653