Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IF654_RS04080 Genome accession   NZ_CP062158
Coordinates   797858..799225 (+) Length   455 a.a.
NCBI ID   WP_047273562.1    Uniprot ID   A0A6N3UPY1
Organism   Pseudomonas lundensis strain 2T.2.5.2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 792858..804225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF654_RS04055 (IF654_06865) - 793020..793733 (-) 714 WP_047283092.1 helix-turn-helix transcriptional regulator -
  IF654_RS04060 (IF654_06860) - 794134..794910 (+) 777 WP_047279067.1 ferredoxin--NADP reductase -
  IF654_RS04065 (IF654_06855) mscL 794977..795390 (-) 414 WP_047273558.1 large-conductance mechanosensitive channel protein MscL -
  IF654_RS04070 (IF654_06850) katB 795676..797217 (+) 1542 WP_047273559.1 catalase KatB -
  IF654_RS04075 (IF654_06845) - 797281..797811 (+) 531 WP_047283089.1 ankyrin repeat domain-containing protein -
  IF654_RS04080 (IF654_06840) radA 797858..799225 (+) 1368 WP_047273562.1 DNA repair protein RadA Machinery gene
  IF654_RS04085 (IF654_06835) - 799229..799600 (-) 372 WP_169837951.1 PilZ domain-containing protein -
  IF654_RS04090 (IF654_06830) - 799770..801836 (+) 2067 WP_047273564.1 carbon starvation CstA family protein -
  IF654_RS04095 (IF654_06825) - 801852..802049 (+) 198 WP_047273565.1 YbdD/YjiX family protein -
  IF654_RS04100 (IF654_06820) yjiA 802187..803158 (+) 972 WP_047281336.1 GTPase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48808.38 Da        Isoelectric Point: 7.1761

>NTDB_id=486555 IF654_RS04080 WP_047273562.1 797858..799225(+) (radA) [Pseudomonas lundensis strain 2T.2.5.2]
MAKPKRIYGCTECGATFPKWAGQCGECGVWNTLVETVVESGSAAPPSGRTGWTGQQAQLKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCHMATRMPALYVTGEESQQQVAMRARRLGLPQDRLKVMTETCIESIIA
TAKLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKSSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=486555 IF654_RS04080 WP_047273562.1 797858..799225(+) (radA) [Pseudomonas lundensis strain 2T.2.5.2]
ATGGCCAAGCCCAAGCGCATTTACGGCTGCACTGAGTGCGGTGCAACGTTTCCCAAGTGGGCCGGGCAGTGCGGCGAGTG
CGGTGTCTGGAACACGCTGGTCGAAACCGTCGTGGAAAGCGGTTCTGCGGCACCGCCCAGCGGTCGCACCGGTTGGACCG
GGCAGCAAGCCCAGCTCAAAACCCTGGCGGAAGTCAGCATCGAAGAGATTCCGCGTTTTTCCACAGCATCCGGCGAGCTG
GATCGCGTGCTGGGTGGCGGACTGGTCGACGGCTCTGTGGTGCTGATTGGTGGCGATCCGGGTATCGGTAAATCCACCAT
CCTGCTGCAAACCCTCTGTCACATGGCCACGCGCATGCCAGCGTTGTACGTGACGGGCGAAGAGTCCCAGCAGCAAGTGG
CCATGCGCGCCCGCCGCCTGGGGCTGCCGCAGGACCGCCTCAAGGTGATGACCGAGACCTGCATCGAAAGCATCATCGCC
ACGGCCAAGCTCGAAAAACCCAAGGTCATGGTGATCGACTCGATCCAGACCATTTTTACCGAACAACTGCAATCGGCCCC
GGGTGGCGTTTCGCAAGTGCGTGAAAGCGCGGCGTTGCTGGTGCGTTATGCCAAATCCAGTGGCACGGCGATTTTCCTCG
TCGGTCACGTGACCAAAGAAGGCGCGCTGGCCGGGCCTCGCGTGCTGGAGCACATGGTCGATACCGTGCTGTATTTCGAA
GGCGAGTCCGATGGACGCTTGCGCCTGCTGCGTGCGGTGAAAAACCGTTTTGGTGCCGTCAACGAACTGGGCGTGTTCGG
CATGACCGACAAAGGCCTGAAAGAAGTGTCCAACCCGTCAGCGATTTTCCTGACGCGCGCGCAGGAAGAAGTACCGGGCA
GTGTGGTCATGGCGACCTGGGAAGGCACGCGTCCGATGCTGGTCGAAGTGCAGGCGCTGGTGGACGACAGCCACATGTCC
AACCCGCGGCGCGTGACATTGGGGCTGGATCAGAACCGGTTGGCCATGTTGCTGGCCGTGTTGCATCGCCATGGTGGCAT
CCCGACCCACGATCAGGACGTATTCCTCAACGTGGTGGGCGGGGTGAAAGTGCTCGAAACGGCGTCTGACCTGGCCTTGA
TGGCGGCGGTGATGTCGAGCTTGCGCAATCGCCCGTTGCCCCACGATTTGCTGGTATTCGGGGAAGTCGGCCTGTCGGGC
GAAGTGCGTCCGGTGCCGAGCGGGCAAGAGCGTCTCAAGGAAGCGGCCAAGCATGGCTTCAAACGCGCCATCGTCCCCAA
GGGTAATGCCCCGAAAGAGTCACCGCCCGGTTTGCAGATCATCGGGGTGACGCGGCTGGAGCAGGCGCTCGATGCCCTGT
TTGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N3UPY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.488
  radA Streptococcus mitis SK321

47.368

100

0.475
  radA Streptococcus mitis NCTC 12261

47.149

100

0.473
  radA Streptococcus pneumoniae Rx1

47.149

100

0.473
  radA Streptococcus pneumoniae D39

47.149

100

0.473
  radA Streptococcus pneumoniae R6

47.149

100

0.473
  radA Streptococcus pneumoniae TIGR4

47.149

100

0.473