Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   TL13_RS05330 Genome accession   NC_021213
Coordinates   1074746..1075489 (+) Length   247 a.a.
NCBI ID   WP_015646908.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1069746..1080489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS05305 (TL13_1049) - 1069839..1069997 (-) 159 WP_015646905.1 hypothetical protein -
  TL13_RS05310 (TL13_1050) obgE 1070372..1071685 (-) 1314 WP_015646906.1 GTPase ObgE -
  TL13_RS05315 (TL13_1051) - 1071891..1072019 (-) 129 WP_002943675.1 DUF4044 domain-containing protein -
  TL13_RS05320 - 1072191..1072574 (-) 384 WP_032514712.1 hypothetical protein -
  TL13_RS05325 uvrC 1072735..1074504 (-) 1770 WP_024409440.1 excinuclease ABC subunit UvrC Machinery gene
  TL13_RS05330 (TL13_1053) pptA 1074746..1075489 (+) 744 WP_015646908.1 ABC transporter ATP-binding protein Regulator
  TL13_RS05335 (TL13_1054) - 1075486..1077096 (+) 1611 WP_015646909.1 hypothetical protein -
  TL13_RS05340 (TL13_1055) - 1077119..1077562 (-) 444 WP_002935466.1 VOC family protein -
  TL13_RS05345 (TL13_1056) ldcB 1077652..1078407 (-) 756 WP_015646910.1 LD-carboxypeptidase LdcB/DacB -
  TL13_RS05350 (TL13_1057) - 1078913..1079161 (-) 249 WP_015646911.1 phage holin -
  TL13_RS05355 (TL13_1058) - 1079550..1080314 (-) 765 WP_015646912.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27662.53 Da        Isoelectric Point: 4.6449

>NTDB_id=48654 TL13_RS05330 WP_015646908.1 1074746..1075489(+) (pptA) [Streptococcus suis TL13]
MIQFDHITKTYGETIALDDLNLTIESGEIFGLIGHNGAGKTTTISLLTSIIEASYGTISVDGLNLEENRDEVKKRIAYVP
DSPDIFLHLTAFEYWHFMGKVYGVEKDTVDDRIAKLSSLFDMIARQHEPIDSFSHGMRQKTIIIGALIPNPDIWILDEPL
TGLDPQASFDLKQMMKEHAQSGHTVLFSTHVLSVAEQLCDRIAILRKGQLIFVGSLDELKSQYPDKDLETIYLELAGRQQ
VKAGEEV

Nucleotide


Download         Length: 744 bp        

>NTDB_id=48654 TL13_RS05330 WP_015646908.1 1074746..1075489(+) (pptA) [Streptococcus suis TL13]
ATGATACAATTTGACCATATCACAAAAACATACGGCGAAACGATCGCACTTGATGACCTAAATTTGACAATTGAAAGCGG
CGAGATTTTCGGTTTAATTGGTCACAATGGGGCAGGAAAAACAACGACAATCAGTCTATTGACTTCGATCATCGAAGCCA
GTTATGGAACTATCTCTGTTGATGGTTTAAACCTAGAGGAGAACCGCGATGAAGTCAAAAAACGGATAGCCTATGTTCCA
GATTCGCCAGATATTTTCCTACACTTAACAGCTTTTGAATACTGGCACTTTATGGGCAAGGTCTATGGTGTAGAAAAGGA
TACAGTTGATGACCGTATCGCTAAATTATCTAGTCTATTTGATATGATAGCGCGCCAGCATGAGCCTATTGATAGTTTTT
CACACGGTATGCGTCAGAAAACCATTATTATTGGTGCATTGATCCCTAACCCTGATATTTGGATCTTGGATGAACCCCTA
ACTGGACTGGATCCTCAGGCTTCTTTCGACCTAAAACAAATGATGAAAGAACATGCTCAATCTGGTCACACCGTTCTATT
TTCTACACACGTCCTTTCAGTGGCTGAACAACTCTGTGACCGCATTGCTATTCTCCGAAAAGGGCAACTCATTTTCGTAG
GTAGCCTTGATGAACTCAAATCACAGTATCCAGATAAAGATTTGGAGACCATCTATTTGGAATTAGCTGGACGCCAACAA
GTGAAGGCAGGTGAGGAAGTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

36.929

97.571

0.36
  pptA Streptococcus salivarius strain HSISS4

36.929

97.571

0.36

Multiple sequence alignment