Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H7691_RS05500 Genome accession   NZ_CP062156
Coordinates   1258911..1260287 (+) Length   458 a.a.
NCBI ID   WP_056931002.1    Uniprot ID   -
Organism   Stenotrophomonas sp. CW117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1253911..1265287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7691_RS05485 (H7691_05485) cyoC 1255613..1256251 (+) 639 WP_054664219.1 cytochrome o ubiquinol oxidase subunit III -
  H7691_RS05490 (H7691_05490) cyoD 1256251..1256592 (+) 342 WP_054664221.1 cytochrome o ubiquinol oxidase subunit IV -
  H7691_RS05495 (H7691_05495) - 1256715..1258772 (-) 2058 WP_056931001.1 bifunctional diguanylate cyclase/phosphodiesterase -
  H7691_RS05500 (H7691_05500) radA 1258911..1260287 (+) 1377 WP_056931002.1 DNA repair protein RadA Machinery gene
  H7691_RS05505 (H7691_05505) - 1260333..1260803 (+) 471 WP_225546689.1 hypothetical protein -
  H7691_RS05510 (H7691_05510) ccsA 1260832..1261626 (-) 795 WP_056931003.1 cytochrome c biogenesis protein CcsA -
  H7691_RS05515 (H7691_05515) ffh 1261745..1263124 (+) 1380 WP_054664236.1 signal recognition particle protein -
  H7691_RS05520 (H7691_05520) - 1263200..1264270 (+) 1071 WP_054664239.1 nitronate monooxygenase -
  H7691_RS05525 (H7691_05525) - 1264267..1265061 (+) 795 WP_225546690.1 aminotransferase class IV family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48155.45 Da        Isoelectric Point: 7.0909

>NTDB_id=486539 H7691_RS05500 WP_056931002.1 1258911..1260287(+) (radA) [Stenotrophomonas sp. CW117]
MAKNRTAYVCSECGAEYSKWQGQCGECGAWNVLAEVVLESAAAAKAPAARRGGWAGKLEPPKITALKDVQQSEHARVSTG
IGEFDRVLGGGLVEGAVVLVGGDPGIGKSTLLLQALARMAGSLPVLYVTGEESLAQVAGRAVRLDLPLDGLDALAETGVE
LILQHAAAARPRLIVADSVQTLWTETLTAAPGSVSQVRESAARLVRFAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDAV
LYFEGESGSRFRVLRAFKNRFGAVNELGVFAMGEKGLKEVPNPSAIFLSGGSTRQPGSCVMVTREGTRPLLVEVQALVDS
SPLSNPRRVAVGLEQNRLAMLLAVLHRHGGVMVGDQDVFINVVGGIRVQETAVDLPVLLAVLSSLRDQPLAEKTIAFGEV
GLSGEIRPVPNGEERLREAATHGFKRAIVPRANAPKAGSVKGMEVIAVERLAEAIEAA

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=486539 H7691_RS05500 WP_056931002.1 1258911..1260287(+) (radA) [Stenotrophomonas sp. CW117]
ATGGCGAAGAACCGCACCGCCTATGTCTGCAGCGAATGCGGCGCCGAGTACAGCAAATGGCAGGGCCAGTGCGGCGAATG
CGGCGCCTGGAACGTCCTGGCCGAGGTGGTGCTGGAAAGCGCGGCCGCGGCGAAGGCGCCGGCCGCGCGCCGCGGCGGCT
GGGCCGGCAAGCTCGAGCCGCCGAAGATCACCGCGCTCAAGGACGTGCAGCAGAGCGAGCATGCGCGGGTTTCCACCGGC
ATCGGCGAGTTCGACCGGGTGCTGGGCGGCGGCCTGGTCGAAGGCGCGGTGGTGCTGGTCGGCGGCGACCCCGGCATCGG
CAAGTCGACCCTGCTGCTGCAGGCGCTGGCGAGGATGGCCGGCAGCCTGCCGGTGCTGTACGTGACCGGCGAGGAATCCC
TGGCGCAGGTGGCCGGGCGCGCGGTGCGCCTGGACCTGCCGCTGGACGGGCTGGATGCGCTGGCCGAGACCGGCGTCGAA
CTGATCCTGCAGCACGCCGCCGCGGCGCGCCCCAGGCTGATCGTCGCCGACTCGGTGCAGACGCTGTGGACCGAGACGCT
GACCGCCGCGCCGGGCTCGGTCAGCCAGGTGCGCGAGAGCGCGGCACGGCTGGTGCGCTTTGCCAAGGAGACCGGCACCG
CGGTGTTCCTGGTCGGCCACGTCACCAAGGAGGGCGGCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTCGACGCGGTG
CTGTACTTCGAGGGCGAGAGCGGCAGCCGCTTCCGGGTGCTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACT
GGGCGTGTTCGCGATGGGCGAGAAGGGGCTGAAGGAAGTGCCCAATCCCTCGGCCATCTTCCTGTCCGGCGGCAGCACGC
GCCAGCCCGGCAGCTGCGTGATGGTCACCCGCGAGGGCACCCGGCCGCTGCTGGTGGAGGTGCAGGCGCTGGTCGATTCC
TCGCCGCTGTCCAACCCGCGCCGGGTCGCGGTGGGACTGGAGCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCG
CCATGGCGGGGTGATGGTTGGCGACCAGGACGTGTTCATCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACCGCGGTCG
ACCTGCCGGTGCTGCTGGCGGTGCTGTCGTCGCTGCGCGACCAGCCGTTGGCGGAGAAGACCATCGCCTTCGGCGAGGTC
GGGCTGTCCGGCGAGATCCGCCCTGTACCCAATGGCGAGGAGCGCCTGCGCGAGGCGGCCACCCATGGTTTCAAGCGCGC
CATCGTACCCCGCGCCAACGCGCCCAAGGCCGGTTCGGTCAAGGGCATGGAGGTGATCGCGGTCGAGCGGCTGGCCGAAG
CGATCGAGGCGGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

AAA domain (AAA_25)

(87-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.696

100

0.489
  radA Streptococcus mitis NCTC 12261

42.763

99.563

0.426
  radA Streptococcus pneumoniae Rx1

42.763

99.563

0.426
  radA Streptococcus pneumoniae D39

42.763

99.563

0.426
  radA Streptococcus pneumoniae R6

42.763

99.563

0.426
  radA Streptococcus pneumoniae TIGR4

42.763

99.563

0.426
  radA Streptococcus mitis SK321

42.544

99.563

0.424